Protein Alignment CG8916 and Rdl

DIOPT Version :9

• Sequence 1: NP_573090.3
• Gene: CG8916 / 32553
• FlyBaseID: FBgn0030707
• Length: 612
• Species: Drosophila melanogaster
• Sequence 2: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Alignment Length: 604
• Identity: 174/604 - (28%)
• Similarity: 273/604 - (45%)
• Gaps: 122/604 - (20%)

  Fly    79 ATNLSYSSSEISNQRRVRRKAA---ADMLSR-NISMILENLLKRYEQSQLPTHGQGVPTVVQTNI 139
            |.|::..:.|..::|....:||   ..||.. |||.||::....|::...|.:| |.|..|...:
  Fly    26 AINMALIAQETGHKRIHTVQAATGGGSMLGDVNISAILDSFSVSYDKRVRPNYG-GPPVEVGVTM 89

  Fly   140 LIRSMGPVSELDMDYSMDCYFRQYWRDKRLSF-KGP-IKSLSLSIKMLDKIWRPDTYFYNGKHSQ 202
            .:.|:..:||:.||:::|.||||:|.|.||:: |.| :::||:..:.:..||.|||:|.|.|.|.
  Fly    90 YVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSY 154

  Fly   203 IHMITVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYGYINQQLIYEWKN 267
            .|:.|..|:.:|:..:|.|..|:||||.|:|||.||.||||||.|.:.|.|:||..:.:.|.|::
  Fly   155 FHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRD 219

  Fly   268 QDDAVSFVPGMTLNQFDLISMMHR----NFTTVRREGDFSVLHVAFNLKRHTGYFLIQVYVPCIL 328
            ...:|.....:.|.||.::....|    |.||    |::|.|.......|..||:|||:|:|..|
  Fly   220 GLSSVGMSSEVELPQFRVLGHRQRATEINLTT----GNYSRLACEIQFVRSMGYYLIQIYIPSGL 280

  Fly   329 IVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALDWFLLMSFLYCIATL 393
            ||::||||||::|.||..||:|.||:|||::|:...:...|||:.|..::|.:|...|:...|:|
  Fly   281 IVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASL 345

  Fly   394 LEFAGVHYFTKLGSGESPQLEDQWEDICIANSLSDHAGEVDGDGEADADPFADEDSSNGSENDDN 458
            ||:|.|.|..|     ..|:..| ..:.|.........::||..:..|:|     :.|.:.....
  Fly   346 LEYATVGYMAK-----RIQMRKQ-RFMAIQKIAEQKKQQLDGANQQQANP-----NPNANVGGPG 399

  Fly   459 EAGASESVESKSGVCVCNKNDALGLEYE-------------------VSLQNSLAGAGFLKRN-- 502
            ..|.........|..| |....:|:..|                   .::.|...|...:::|
  Fly   400 GVGVGPGGPGGPGGGV-NVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSNIQQNVG 463

  Fly   503 ----AIFCPTY-------NDP-SYILPNTMERTTQ------------------------------ 525
                :|..|.:       :|| ::....|:|.|..
  Fly   464 TRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGG 528

  Fly   526 ------TEPPAVSRLHQMWMCLKSDNSFRKQRERNAAAQKSEQGGANCYVNSV-----SLIDRVA 579
                  .:|.|....|     |......:|.::                :|.:     |.||:.:
  Fly   529 GPPEGGGDPEAAVPAH-----LLHPGKVKKVKD----------------INKLLGITPSDIDKYS 572

  Fly   580 RIAFPMSFAFLNLLYWWAY 598
            ||.||:.|...||:||..|
  Fly   573 RIVFPVCFVCFNLMYWIIY 591

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG8916	NP_573090.3	LIC	92..598	CDD:273305	170/589 (29%)
		Neur_chan_LBD	111..315	CDD:280998	77/209 (37%)
		Neur_chan_memb	322..>403	CDD:280999	37/80 (46%)
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	69/186 (37%)
		Neur_chan_memb	274..588	CDD:397193	78/346 (23%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	P	PTHR18945
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	3	2.910