DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and lgc-36

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_001023766.1 Gene:lgc-36 / 3565335 WormBaseID:WBGene00008551 Length:536 Species:Caenorhabditis elegans


Alignment Length:635 Identity:190/635 - (29%)
Similarity:289/635 - (45%) Gaps:142/635 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VSLVPFIIIGFMAHFCACEDVTSSDLLYIKTMGPSAILTKMPNITNEFSSRIFSSFRILPSSKPK 68
            |||:.|.|...:...|..|...:.:.:..::.|                     ||||..:..||
 Worm    10 VSLIIFFISTIILSVCGNELKFTIENVKFRSPG---------------------SFRIKRTVHPK 53

  Fly    69 TNGSLKRSQNATNLSYSSSEISNQRRVRRKAAADMLSRNISMILENLLKRYEQSQLPTHGQGVPT 133
                                       |.|..|    :|::.:|.|:||.|:|...|....|.||
 Worm    54 ---------------------------REKGVA----QNVTHLLNNVLKNYDQHFRPGFNSGKPT 87

  Fly   134 VVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDKRLSFKGP---IKSLSLSIKMLDKIWRPDTYF 195
            .|..::.||:|||||:|...||.:|||||.|.|.||.|...   .:.||||:.||||||:|||||
 Worm    88 KVYIDLFIRTMGPVSDLFNTYSFNCYFRQKWTDDRLHFNNSGIGFRQLSLSMAMLDKIWKPDTYF 152

  Fly   196 YNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYGYINQQ 260
            :||..|.:|.||..|:|:||:.:|.||||.|:|:||.|.|::..:|:|:|:|.||||||.|.:.:
 Worm   153 WNGAGSYVHGITTSNRLVRLEPDGTILYSSRITVKAKCQMDMSRYPLDKQACRLVIGSYAYSSDE 217

  Fly   261 LIYEWKNQDD----AVSFVPGMTLNQFDLISMMHRNFTTVRREGDFSVLHVAFNLKRHTGYFLIQ 321
            :.|:|:...|    .:.:.....|.||.|..........:.|:.::|.|.|.|...||.||||:.
 Worm   218 VQYKWRIMGDDNGVKIDYESIADLPQFSLSGFKVYKPANITRDKEYSALEVRFYFDRHFGYFLMN 282

  Fly   322 VYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALDWFLLMSF 386
            .||||.|:|:|.||:|:..||||::|:.:.:|:|||:..||:||::|.|||...|||:.|:.:.:
 Worm   283 FYVPCALVVLLCWVAFFTKREATAERIGIGITNVLTIVLISMDSKSDSPKVDSPTALEVFIWICY 347

  Fly   387 LYCIATLLEFAGVHYFTKLGSGESPQLEDQWEDICIANSLSDHAGEVDGDGEADADPFADEDSSN 451
            |..:..::||..|||.||..:|: |:::                 ||:.:..........::::|
 Worm   348 LTHLICMVEFTVVHYHTKYNTGD-PEIQ-----------------EVERERLRQIIKQIPKNTNN 394

  Fly   452 GSENDDNEAGASESVESKSGVCVCNKNDALGLEYEVSLQNSLAGAGFLKRNAIFCPTYNDPSYIL 516
                     .|:|..                               |.:|||....:...|   |
 Worm   395 ---------RATEPT-------------------------------FRRRNAALPVSIARP---L 416

  Fly   517 PNTMERTTQTEPPAVS------RLHQMWMCLKSDNSFRKQRERNAAAQKSEQGGANCYV------ 569
            ||..:|......|..|      :|.:....::|......:...|..:.:.|..|...|.      
 Worm   417 PNKTKRFMSVRQPKKSEQTESIQLMRKISNMESTTHNEVESSLNLESIRQENVGWRLYYWMIDHN 481

  Fly   570 ----------NSVSLIDRVARIAFPMSFAFLNLLYWWAYGMYKKEFSWSN 609
                      ||.|.||:::.|..|:.|.....||:..|.....:|::.|
 Worm   482 IKTDPFGVAQNSTSRIDKISVIVAPLIFILTIALYYDFYVNRVFKFNFDN 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 173/534 (32%)
Neur_chan_LBD 111..315 CDD:280998 91/210 (43%)
Neur_chan_memb 322..>403 CDD:280999 37/80 (46%)
lgc-36NP_001023766.1 LIC 48..520 CDD:273305 175/563 (31%)
Neur_chan_LBD 63..272 CDD:280998 90/208 (43%)
Neur_chan_memb 284..511 CDD:280999 71/287 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 180 1.000 Domainoid score I2091
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 1 1.000 - - FOG0000415
OrthoInspector 1 1.000 - - oto18877
orthoMCL 1 0.900 - - OOG6_105663
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X127
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.820

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