DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and Gabrg2

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_001380704.1 Gene:Gabrg2 / 29709 RGDID:61966 Length:474 Species:Rattus norvegicus


Alignment Length:495 Identity:164/495 - (33%)
Similarity:246/495 - (49%) Gaps:90/495 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 NISMILENLLKRYEQSQLPTHGQGVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDKRLSF 171
            ::::||.|||:.|:....|..|. .||::.|::.:.|:|||:.::|:|::|.:|.|.|.|:||.|
  Rat    64 DVTVILNNLLEGYDNKLRPDIGV-KPTLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKF 127

  Fly   172 KGPIKSLSLSIKMLDKIWRPDTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKATCPME 236
            ...||.|.|:..|:.|||.|||:|.|.|.:..|.||.||::||:..:|.:||::||||.|.|.::
  Rat   128 NSTIKVLRLNSNMVGKIWIPDTFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAECQLQ 192

  Fly   237 LQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQDDAVSFVPGMTLNQFDLISMMHRNFTTVRR--E 299
            |.|||||..||||...||||..::::|:||.....|.......|.||..:.:  ||.|.|.:  .
  Rat   193 LHNFPMDEHSCPLEFSSYGYPREEIVYQWKRSSVEVGDTRSWRLYQFSFVGL--RNTTEVVKTTS 255

  Fly   300 GDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISLD 364
            ||:.|:.|.|:|.|..|||.||.|:||.||||||||||||:::|...|.||.:|:|||::|:|..
  Rat   256 GDYVVMSVYFDLSRRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTI 320

  Fly   365 SRTDLPKVKYATALDWFLLMSFLYCIATLLEFAGVHYFTKLGSGESPQLE-DQWEDICIANSLSD 428
            :|..||||.|.||:|.|:.:.|::..:.|:|:..:|||.   |...|..: |:.:...:....|.
  Rat   321 ARKSLPKVSYVTAMDLFVSVCFIFVFSALVEYGTLHYFV---SNRKPSKDKDKKKKNPLLRMFSF 382

  Fly   429 HAGEVDGDGEADADPFADEDSSNGSENDDNEAGASESVESKSGVCVCNKNDALGLEYEVSLQNSL 493
            .|            |..|....:.:...:|.....|..|.....|:..|:.|             
  Rat   383 KA------------PTIDIRPRSATIQMNNATHLQERDEEYGYECLDGKDCA------------- 422

  Fly   494 AGAGFLKRNAIFCPTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMCLKSDNSFRKQRERNAAAQ 558
                     :.|| .:.|            .:|......|:|                       
  Rat   423 ---------SFFC-CFED------------CRTGAWRHGRIH----------------------- 442

  Fly   559 KSEQGGANCYVNSVSLIDRVARIAFPMSFAFLNLLYWWAY 598
                       ..::.:|..|||.||.:|...||:||.:|
  Rat   443 -----------IRIAKMDSYARIFFPTAFCLFNLVYWVSY 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 163/493 (33%)
Neur_chan_LBD 111..315 CDD:280998 87/205 (42%)
Neur_chan_memb 322..>403 CDD:280999 40/80 (50%)
Gabrg2NP_001380704.1 LIC 68..471 CDD:273305 163/489 (33%)
LGIC_ECD_GABAAR_G 89..270 CDD:349801 77/182 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I2964
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm45994
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X127
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.920

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