DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and Gabra1

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_899155.1 Gene:Gabra1 / 29705 RGDID:61855 Length:455 Species:Rattus norvegicus


Alignment Length:512 Identity:183/512 - (35%)
Similarity:261/512 - (50%) Gaps:117/512 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 DMLSRNISM---ILENLLKRYEQSQLPTHGQGVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQY 163
            |.|..|.::   ||:.||..|:....|..|:.| |.|:|:|.:.|.||||:.||:|::|.:|||.
  Rat    32 DELKDNTTVFTRILDRLLDGYDNRLRPGLGERV-TEVKTDIFVTSFGPVSDHDMEYTIDVFFRQS 95

  Fly   164 WRDKRLSFKGPIKSLSLSIKMLDKIWRPDTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLT 228
            |:|:||.||||:..|.|:..|..|||.|||:|:|||.|..|.:|:||||||:.::|.:||:||||
  Rat    96 WKDERLKFKGPMTVLRLNNLMASKIWTPDTFFHNGKKSVAHNMTMPNKLLRITEDGTLLYTMRLT 160

  Fly   229 IKATCPMELQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQDDAVSFV---PGMTLNQFDLISMMH 290
            ::|.|||.|::||||..:|||..|||.|...:::||| .::.|.|.|   .|..|||:||:....
  Rat   161 VRAECPMHLEDFPMDAHACPLKFGSYAYTRAEVVYEW-TREPARSVVVAEDGSRLNQYDLLGQTV 224

  Fly   291 RNFTTVRREGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSV 355
            .:.......|::.|:...|:|||..|||:||.|:|||:.|:||.||||::||:...|....||:|
  Rat   225 DSGIVQSSTGEYVVMTTHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTV 289

  Fly   356 LTLSTISLDSRTDLPKVKYATALDWFLLMSFLYCIATLLEFAGVHYFTKLGSGESPQLEDQWEDI 420
            ||::|:|:.:|..||||.||||:|||:.:.:.:..:.|:|||.|:||||.|..        |   
  Rat   290 LTMTTLSISARNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGYA--------W--- 343

  Fly   421 CIANSLSDHAGEVDGDGEADADPFADEDSSNGSENDDNEAGASESVESKSGVCVCNKNDALGLEY 485
                         ||.......|...:|.                                    
  Rat   344 -------------DGKSVVPEKPKKVKDP------------------------------------ 359

  Fly   486 EVSLQNSLAGAGFLKRNAIFCPTYNDPSYILPN---------TMERTTQTEPPAVSRLHQMWMCL 541
                        .:|:|..:.||..  || .||         |:.::...||..|          
  Rat   360 ------------LIKKNNTYAPTAT--SY-TPNLARGDPGLATIAKSATIEPKEV---------- 399

  Fly   542 KSDNSFRKQRERNAAAQKSEQGGANCYVNSVSLIDRVARIAFPMSFAFLNLLYWWAY 598
                   |...:....:|:        .||||.|||::|||||:.|...||:||..|
  Rat   400 -------KPETKPPEPKKT--------FNSVSKIDRLSRIAFPLLFGIFNLVYWATY 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 182/510 (36%)
Neur_chan_LBD 111..315 CDD:280998 95/206 (46%)
Neur_chan_memb 322..>403 CDD:280999 39/80 (49%)
Gabra1NP_899155.1 LIC 7..441 CDD:273305 182/510 (36%)
LGIC_ECD_GABAAR_A1 55..248 CDD:349835 89/194 (46%)
Cys-loop 165..179 CDD:349835 8/13 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I2964
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 1 1.000 - - FOG0000415
OrthoInspector 1 1.000 - - otm45994
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X127
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.920

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