DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and Gabrd

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_058985.1 Gene:Gabrd / 29689 RGDID:61901 Length:449 Species:Rattus norvegicus


Alignment Length:509 Identity:141/509 - (27%)
Similarity:230/509 - (45%) Gaps:99/509 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 DMLSRNISMI----LENLLKRYEQSQLPTHGQGVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQ 162
            |.:..|:.:.    |:.|::.|.::..|..| |.|..|...:.:.|:..:||.:|:|:|..:..|
  Rat    30 DYVGSNLEISWLPNLDGLMEGYARNFRPGIG-GPPVNVALALEVASIDHISEANMEYTMTVFLHQ 93

  Fly   163 YWRDKRLSFKGPIKSLSLSIKMLDKIWRPDTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRL 227
            .|||.|||:....::|.|..:.:||:|.|||:..|.|.:..|.:||.|||:||..:|.||||:|:
  Rat    94 SWRDSRLSYNHTNETLGLDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDGVILYSIRI 158

  Fly   228 TIKATCPMELQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQDDAVSFVPGMTLNQFDLISMMHRN 292
            |....|.|:|..:|||.|.|.|.:.||||.::.::|.|....:.:..:..:.|.||.:.|.   .
  Rat   159 TSTVACDMDLAKYPMDEQECMLDLESYGYSSEDIVYYWSENQEQIHGLDRLQLAQFTITSY---R 220

  Fly   293 FTT----VRREGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVT 353
            |||    .:..|.|..|.:.|.|:|:.|.::||.|:|.:|:|.:|||||||.:.|...||||.:|
  Rat   221 FTTELMNFKSAGQFPRLSLHFQLRRNRGVYIIQSYMPSVLLVAMSWVSFWISQAAVPARVSLGIT 285

  Fly   354 SVLTLSTISLDSRTDLPKVKYATALDWFLLMSFLYCIATLLEFAGVHYFTKLGSGESPQLEDQWE 418
            :|||::|:.:.:|:.||:.....|||.:..:.:::..|.|:|:|..|:                 
  Rat   286 TVLTMTTLMVSARSSLPRASAIKALDVYFWICYVFVFAALVEYAFAHF----------------- 333

  Fly   419 DICIANSLSDHAGEVDGDGEADADPFADEDSSNGSENDDNEAGASESVESKSGVCVCNKNDALGL 483
                                                      .|....:.|:.|.|......:.:
  Rat   334 ------------------------------------------NADYRKKRKAKVKVTKPRAEMDV 356

  Fly   484 EYEVSLQNSLAGAGFLKRNAIFCPTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMCLKSDNSFR 548
            ...:.| .||:.||..:..||.......|..:                         :.|..|..
  Rat   357 RNAIVL-FSLSAAGVSQELAISRRQGRVPGNL-------------------------MGSYRSVE 395

  Fly   549 KQRERNAAAQKSEQGGANCYVNSV--SLIDRVARIAFPMSFAFLNLLYWWAYGM 600
            .:.::...::....||....:..:  ..||..||..||.:||.:|::||.||.|
  Rat   396 VEAKKEGGSRPGGPGGIRSRLKPIDADTIDIYARAVFPAAFAAVNIIYWAAYTM 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 138/505 (27%)
Neur_chan_LBD 111..315 CDD:280998 74/211 (35%)
Neur_chan_memb 322..>403 CDD:280999 32/80 (40%)
GabrdNP_058985.1 LGIC_ECD 63..246 CDD:355788 67/185 (36%)
LGIC_TM 249..>337 CDD:365787 35/146 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.770

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