DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8916 and GLRA1

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_001139512.1 Gene:GLRA1 / 2741 HGNCID:4326 Length:457 Species:Homo sapiens


Alignment Length:537 Identity:165/537 - (30%)
Similarity:251/537 - (46%) Gaps:117/537 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 YSSSEISNQRRVRRKAAADMLSRNISMILENLLKR---YEQSQLPTHGQGVPTVVQTNILIRSMG 145
            :.|...|.:....|.|...|   :.|..|:.|:.|   |: :::..:.:|.|..|..||.|.|.|
Human    17 FFSLAASKEAEAARSAPKPM---SPSDFLDKLMGRTSGYD-ARIRPNFKGPPVNVSCNIFINSFG 77

  Fly   146 PVSELDMDYSMDCYFRQYWRDKRLSF-KGPIKSLSLSIKMLDKIWRPDTYFYNGKHSQIHMITVP 209
            .::|..|||.::.:.||.|.|.||:: :.|..||.|...|||.||:||.:|.|.|.:..|.||..
Human    78 SIAETTMDYRVNIFLRQQWNDPRLAYNEYPDDSLDLDPSMLDSIWKPDLFFANEKGAHFHEITTD 142

  Fly   210 NKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQDDAVSF 274
            |||||:.:||.:|||:|:|:...|||:|:|||||.|:|.:.:.|:||....||:||:.| .||..
Human   143 NKLLRISRNGNVLYSIRITLTLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQEQ-GAVQV 206

  Fly   275 VPGMTLNQFDLISMMHRNFTTVR-REGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFW 338
            ..|:||.||.|.......:.|.. ..|.|:.:...|:|:|..||:|||:|:|.:|||:|||:|||
Human   207 ADGLTLPQFILKEEKDLRYCTKHYNTGKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWISFW 271

  Fly   339 IHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALDWFLLMSFLYCIATLLEFAGVHYFT 403
            |:.:|...||.|.:|:|||::|.|..||..||||.|..|:|.::.:..|:..:.|||:|.|::.:
Human   272 INMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVS 336

  Fly   404 -----------KLGSGESPQLEDQWEDICIANSLSDHAGEVDGDGEADADPFADEDSSNGSENDD 457
                       |....:||.|                            :.|.::::..|..|..
Human   337 RQHKELLRFRRKRRHHKSPML----------------------------NLFQEDEAGEGRFNFS 373

  Fly   458 NEAGASESVESKSGVCVCNKNDALGLEYEVSLQNSLAGAGFLKRNAIFCPTYNDPSYILPNTMER 522
            ........:::|.|:.|...|::                                          
Human   374 AYGMGPACLQAKDGISVKGANNS------------------------------------------ 396

  Fly   523 TTQTEPPAVSRLHQMWMCLKSDNSFRKQRERNAAAQKSEQGGANCYVNSVSLIDRVARIAFPMSF 587
            .|...|||.|         ||....||                 .::.....||:::||.|||:|
Human   397 NTTNPPPAPS---------KSPEEMRK-----------------LFIQRAKKIDKISRIGFPMAF 435

  Fly   588 AFLNLLYWWAYGMYKKE 604
            ...|:.||..|.:.::|
Human   436 LIFNMFYWIIYKIVRRE 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 161/521 (31%)
Neur_chan_LBD 111..315 CDD:280998 84/208 (40%)
Neur_chan_memb 322..>403 CDD:280999 37/80 (46%)
GLRA1NP_001139512.1 LIC 7..446 CDD:273305 163/529 (31%)
Strychnine-binding. /evidence=ECO:0000250|UniProtKB:O93430 230..235 1/4 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 391..410 8/69 (12%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.