DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and lgc-43

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_001023062.1 Gene:lgc-43 / 259591 WormBaseID:WBGene00008076 Length:679 Species:Caenorhabditis elegans


Alignment Length:405 Identity:108/405 - (26%)
Similarity:180/405 - (44%) Gaps:69/405 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 EDVTSSDLLY-----------IKT-----MGPSAILTKMPNITNEFSSRIFSSFRILPSSKPKTN 70
            |::...||.:           |:|     |.|| .|.|     .|||.|:.|.            
 Worm   244 EEINLEDLQFKSYQFKPGKSKIRTYDLAWMDPS-FLEK-----EEFSVRLTSQ------------ 290

  Fly    71 GSLKRS---QNATNLSYSSSEISNQRRVRRKAAADMLSRNISMILENLLKRYEQSQLPTHGQGVP 132
               :||   ...|||:......:|:.|       |..|..|..:|:::  .|:.:.:|.....:|
 Worm   291 ---QRSDWRDKLTNLTMLEERRANEHR-------DYGSSYILPVLKSV--DYDNTSVPLAFNDIP 343

  Fly   133 --TVVQTNILIRSMGPVSELD---MDYSMDCYFRQYWRDKRL--SFKGPIKSLSLSIKMLDKIWR 190
              ..|..|.|.     ::..|   |::|||......|.|.||  ::..||:.....|  :::|||
 Worm   344 VNVAVAFNFLY-----LANFDSEMMEFSMDVEMEFSWIDIRLVNNYTKPIRIREKPI--IEQIWR 401

  Fly   191 PDTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYG 255
            ||.|..|.|||..|.::.||..:|:...|.:.|::|::...:|.|....:|.|||.|.|.|.|..
 Worm   402 PDPYIVNSKHSYFHYVSFPNIRMRITPEGLVTYTVRVSSVCSCFMSFCLYPHDRQECDLRISSIA 466

  Fly   256 YINQQLIYEWKNQDDAVSFVPGMTLNQFDLISMMHRNFTTVRREGDFSVLHVAFNLKRHTGYFLI 320
            |.||.:.:.|  ..:.:.|...:||.:..:..:.....:|..:..|.|.|.:.|:|:|.:..|:|
 Worm   467 YSNQYVKFHW--HSNPIKFQSKITLPELHITKIKTAECSTKGKLVDASCLRIIFSLERDSARFVI 529

  Fly   321 QVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALD-WFLLM 384
            :.|||..|.::.:||:.::.......|:...:|.:|||  :.::......:..|.|::| ||..|
 Worm   530 EKYVPSTLAMMFAWVAPYVPYNYEDVRIITPITVLLTL--VQMEKGDKEIRTSYLTSIDVWFAAM 592

  Fly   385 SFLYCIATLLEFAGV 399
            . .:.:.:|||...|
 Worm   593 K-SFTVLSLLESLAV 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 87/316 (28%)
Neur_chan_LBD 111..315 CDD:280998 60/210 (29%)
Neur_chan_memb 322..>403 CDD:280999 21/79 (27%)
lgc-43NP_001023062.1 LGIC_ECD_anion 344..523 CDD:349788 55/187 (29%)
LGIC_TM 527..665 CDD:365787 23/83 (28%)
TM1 helix 527..551 CDD:349850 8/23 (35%)
TM2 helix 555..577 CDD:349850 5/23 (22%)
TM3 helix 583..609 CDD:349850 9/25 (36%)
TM4 helix 610..665 CDD:349850
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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