DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8916 and Glrb

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_445748.1 Gene:Glrb / 25456 RGDID:2706 Length:496 Species:Rattus norvegicus


Alignment Length:575 Identity:162/575 - (28%)
Similarity:262/575 - (45%) Gaps:107/575 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 EFSSRIFSSFRILPS-------SKPKTN--GSLKRSQNATNLSYSSSEISNQRRVRRKAAADMLS 105
            :||..:  ||.||.|       ||.|::  |..|:.|.......|:.:::   ||...:.:::|:
  Rat     2 KFSLAV--SFFILMSLLFEDACSKEKSSKKGKGKKKQYLCPSQQSAEDLA---RVPPNSTSNILN 61

  Fly   106 RNISMILENLLKRYEQSQLPTHGQGVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDKRL- 169
            |        ||..|:....|.. :|:|..|..||.|.|.|.:.|..|||.::.:.||.|.|.|| 
  Rat    62 R--------LLVSYDPRIRPNF-KGIPVDVVVNIFINSFGSIQETTMDYRVNIFLRQKWNDPRLK 117

  Fly   170 ---SFKGPIKSLSLSIKMLDKIWRPDTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKA 231
               .|:|. .:|::...|...:|:||.:|.|.|.:..|.:|..|.||.:.::|.:|.||||:|..
  Rat   118 LPSDFRGS-DALTVDPTMYKCLWKPDLFFANEKSANFHDVTQENILLFIFRDGDVLVSMRLSITL 181

  Fly   232 TCPMELQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQDDAVSFVPGMTLNQFDL--ISMMHRNFT 294
            :||::|..||||.|.|.:.:.|:||....|.:.|::.|...  :..:.|.|||:  ..:.:.|.|
  Rat   182 SCPLDLTLFPMDTQRCKMQLESFGYTTDDLRFIWQSGDPVQ--LEKIALPQFDIKKEDIEYGNCT 244

  Fly   295 T-VRREGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTL 358
            . .:..|.::.:.|.|.|:|..|::::.||.|.:|||||||:||||:.:|::.||.|.:.|||:|
  Rat   245 KYYKGTGYYTCVEVIFTLRRQVGFYMMGVYAPTLLIVVLSWLSFWINPDASAARVPLGIFSVLSL 309

  Fly   359 STISLDSRTDLPKVKYATALDWFLLMSFLYCIATLLEFAGVHYFTKLGSGESPQLEDQWEDICIA 423
            ::.......:||||.|..|||.:|:...|:..|:|:|:|.|....     .:|:..:. |...||
  Rat   310 ASECTTLAAELPKVSYVKALDVWLIACLLFGFASLVEYAVVQVML-----NNPKRVEA-EKARIA 368

  Fly   424 NSLSDHAGEVDGDGEADADPFADEDSSNGSENDDNEAGASESV------ESKSGVCVCNKNDALG 482
            .     |.:.||.|           .:...:|..|..|....:      |::......:|:|...
  Rat   369 K-----AEQADGKG-----------GNAAKKNTVNGTGTPVHISTLQVGETRCKKVCTSKSDLRS 417

  Fly   483 LEYEVSLQNSLAGAGFLKRNAIFCPTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMC----LKS 543
            .::      |:.|:                   ||...|.:.             :.|    ::.
  Rat   418 NDF------SIVGS-------------------LPRDFELSN-------------YDCYGKPIEV 444

  Fly   544 DNSFRKQRERNAAAQKSEQGGANCYVNSVSLIDRVARIAFPMSFAFLNLLYWWAY 598
            :|...|.:.:|    |...........:...||..||..||..|.|.|::||..|
  Rat   445 NNGLGKPQAKN----KKPPPAKPVIPTAAKRIDLYARALFPFCFLFFNVIYWSIY 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 147/522 (28%)
Neur_chan_LBD 111..315 CDD:280998 70/210 (33%)
Neur_chan_memb 322..>403 CDD:280999 37/80 (46%)
GlrbNP_445748.1 LIC 43..495 CDD:273305 148/530 (28%)
LGIC_ECD_GlyR_beta 79..265 CDD:349811 64/188 (34%)
Strychnine-binding. /evidence=ECO:0000250|UniProtKB:O93430 247..253 1/5 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.770

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