DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and Gabrr3

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_620252.1 Gene:Gabrr3 / 192258 RGDID:621564 Length:464 Species:Rattus norvegicus


Alignment Length:532 Identity:148/532 - (27%)
Similarity:236/532 - (44%) Gaps:130/532 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 QRRVRR-KAAADMLSRNISMILENLL--KRYEQSQLPTHGQGVPTVVQTNILIRSMGPVSELDMD 153
            |.|:|. :...|.|::...:..|.||  :.::.|..|..| |.|..|..::.:.|:..:||::||
  Rat    37 QTRIRETRMRKDDLTKVWPLKREQLLHIEDHDFSTRPGFG-GSPVPVGIDVQVESIDSISEVNMD 100

  Fly   154 YSMDCYFRQYWRDKRLSFKGPI-KSLSLSIKMLDKIWRPDTYFYNGKHSQIHMITVPNKLLRLDQ 217
            ::|..|.|.||:|:||||.... ||::...:::.|||.||.:|.:.|.|.||..||.|.:||:..
  Rat   101 FTMTFYLRHYWKDERLSFPSTTNKSMTFDRRLIQKIWVPDIFFVHSKRSFIHDTTVENIMLRVHP 165

  Fly   218 NGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQDDAVSFVPGMTLNQ 282
            :|.:|:|:|:|:.|.|.|:...||:|.|:|.|.:.||.|..:.|:..||:.:.:::....::|:|
  Rat   166 DGNVLFSLRITVSAMCFMDFSRFPLDTQNCSLELESYAYNEEDLMLYWKHGNKSLNTEEHISLSQ 230

  Fly   283 FDLISMMHRNFTT------VRREGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHR 341
            |.:     ..|:.      ....|.:..|.:.|.|:||..:|::|.|.|.:|:|:||||||||.|
  Rat   231 FFI-----EEFSASSGLAFYSSTGWYYRLFINFVLRRHIFFFVLQTYFPAMLMVMLSWVSFWIDR 290

  Fly   342 EATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALDWFLLMSFLYCIATLLEFAGVHYFTKLG 406
            .|...||||.:|:|||:|||.......:|:|.|..|:|.::.:|.|:...:::|:|.|:|.|.: 
  Rat   291 RAVPARVSLGITTVLTMSTIVTGVSASMPQVSYVKAVDVYMWVSSLFVFLSVIEYAAVNYLTTV- 354

  Fly   407 SGESPQLEDQWEDICIANSLSD-------HAGEVDG---DGEADADP-----FADEDSSNGSEND 456
                    ::|:.:.....:|.       .|...||   |||.|.|.     .::|||.      
  Rat   355 --------EEWKQLNRRGKISGMYNIDAVQAMAFDGCYHDGETDVDQTSFFLHSEEDSM------ 405

  Fly   457 DNEAGASESVESKSGVCVCNKNDALGLEYEVSLQNSLAGAGFLKRNAIFCPTYNDPSYILPNTME 521
                                                                             
  Rat   406 ----------------------------------------------------------------- 405

  Fly   522 RTTQTEPPAVSRLHQMWMCLKSDNSFRKQRERNAAAQKSEQGGANCYVNSVSLIDRVARIAFPMS 586
            ||..|..|          |..|....||....|.         ....:.:..:||..:||.||:.
  Rat   406 RTKFTGSP----------CADSSQIKRKSLGGNV---------GRIILENNHVIDTYSRIVFPVV 451

  Fly   587 FAFLNLLYWWAY 598
            :...||.||..|
  Rat   452 YIIFNLFYWGIY 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 147/530 (28%)
Neur_chan_LBD 111..315 CDD:280998 70/212 (33%)
Neur_chan_memb 322..>403 CDD:280999 36/80 (45%)
Gabrr3NP_620252.1 LIC 58..463 CDD:273305 142/509 (28%)
LGIC_ECD 79..264 CDD:355788 63/189 (33%)
Cys-loop 181..195 CDD:349787 6/13 (46%)
Interaction with SQSTM1. /evidence=ECO:0000269|PubMed:12431995 344..445 29/199 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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