DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and glra4b

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_001189440.1 Gene:glra4b / 192125 ZFINID:ZDB-GENE-020402-2 Length:492 Species:Danio rerio


Alignment Length:618 Identity:170/618 - (27%)
Similarity:268/618 - (43%) Gaps:156/618 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVRVSLVPFIIIGFMAHFCACEDVTSSDLLYIKTMGPSAILTKMPNITNEFSSRIFSSFRILPSS 65
            ::.:.||.::..|.:.  |.......|..:..|.|.||..|.|:...|:.:.:||..:|:     
Zfish     9 LLELLLVCWMFEGVIR--CVFSKELKSPSVRTKPMSPSDFLDKLMGKTSGYDARIRPNFK----- 66

  Fly    66 KPKTNGSLKRSQNATNLSYSSSEISNQRRVRRKAAADMLSRNISMILENLLKRYEQSQLPTHGQG 130
                                                                            |
Zfish    67 ----------------------------------------------------------------G 67

  Fly   131 VPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDKRLSFKG-PIKSLSLSIKMLDKIWRPDTY 194
            .|..|..||.|.|.|.::|..|||.::.:.||.|.|.||::|. |..||.|...|||.||:||.:
Zfish    68 PPVNVTCNIFINSFGSITETTMDYRLNVFLRQQWNDPRLAYKEYPDDSLDLDPSMLDSIWKPDLF 132

  Fly   195 FYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYGYINQ 259
            |.|.|.:..|.:|..|||||:.|||.:|||:|||:..:|||:|:|||||.|:|.:.:.|:||...
Zfish   133 FANEKGANFHEVTTDNKLLRIFQNGNVLYSIRLTLILSCPMDLKNFPMDTQTCTMQLESFGYTMN 197

  Fly   260 QLIYEWKNQ------DDAVSFVPGMTLNQFDLISMMHRNFTTVRREGDFSVLHVAFNLKRHTGYF 318
            .||::|.::      ||.:  :|...|.:...:....:::.|    |.|:.:.|.|:|:|..||:
Zfish   198 DLIFQWLDEGPVQVADDLM--LPQFVLKEEKDLGYCTKHYNT----GKFTCIEVKFHLERQMGYY 256

  Fly   319 LIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALDWFLL 383
            |||:|:|.:|.|:||||||||:.:|...||.|.:|:|||::|.|..||..||||.|..|:|.::.
Zfish   257 LIQMYIPSLLTVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMA 321

  Fly   384 MSFLYCIATLLEFAGVHYFTKLGSGESPQLEDQWEDIC-IANSLSDHAGEVDGDGEADADPFADE 447
            :..|:..|.|||:|.|::.::           |:::.. :...|..........|:|.|     .
Zfish   322 VCLLFVFAALLEYAAVNFVSR-----------QYKEFFRLRRKLRQEQRNRAASGQAGA-----A 370

  Fly   448 DSSNGSENDDNEAGASESVESKSGVCVCNKNDALGLEYE------VSLQNSLAGAGFLKRNAIFC 506
            ::.|.|   :|..|.:.|..::.....|.:.:.|..:.:      ..:..||:|.|.|...|   
Zfish   371 ETKNKS---NNVTGGTPSRNAQRQCSACAREEQLASQNQDLYFPGFGIDTSLSGDGPLSEAA--- 429

  Fly   507 PTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMCLKSDNSFRKQRERNAAAQKSEQGGANCYVNS 571
                                         .|:..|...::....|.|              :|..
Zfish   430 -----------------------------AMFAGLPPGHALFDIRRR--------------FVEQ 451

  Fly   572 VSLIDRVARIAFPMSFAFLNLLYWWAYGMYKKE 604
            ...||.::|..||:||...|:.||..|.:.:.|
Zfish   452 AKRIDTISRAVFPLSFLVFNVFYWVTYKVLRNE 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 153/519 (29%)
Neur_chan_LBD 111..315 CDD:280998 77/210 (37%)
Neur_chan_memb 322..>403 CDD:280999 38/80 (48%)
glra4bNP_001189440.1 LIC 5..478 CDD:273305 168/610 (28%)
Neur_chan_LBD 47..253 CDD:280998 83/280 (30%)
Neur_chan_memb 260..475 CDD:280999 69/279 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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