DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8916 and glra3

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:XP_021333244.1 Gene:glra3 / 192124 ZFINID:ZDB-GENE-020402-1 Length:489 Species:Danio rerio


Alignment Length:558 Identity:176/558 - (31%)
Similarity:269/558 - (48%) Gaps:104/558 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 KRSQNATNLSYSSSEI--------SNQRRVRRKAAADMLSRNISMILENLLKR---YEQSQLPTH 127
            ||.::.....:.:.||        |.:....|:.||.|   :.|..|:.|:.|   |: :::..:
Zfish     4 KRLRSVAAWGFIAWEIGILLSLVASKEPESPRRRAAPM---SPSDFLDKLMGRTSGYD-ARIRPN 64

  Fly   128 GQGVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDKRLSF-KGPIKSLSLSIKMLDKIWRP 191
            .:|.|..|..||.|.|.|.::|..|||.::.:.||.|.|.||:: :.|..||.|...|||.||:|
Zfish    65 FKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLDPSMLDSIWKP 129

  Fly   192 DTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYGY 256
            |.:|.|.|.:..|.:|..|||||:.:||.:|||:|||:..:|||:|:|||||.|:|.:.:.|:||
Zfish   130 DLFFANEKGAHFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGY 194

  Fly   257 INQQLIYEWKNQDDAVSFVPGMTLNQFDLISMMHRNFTTVR-REGDFSVLHVAFNLKRHTGYFLI 320
            ....||:||: :...|....|:||.||.|.......:.|.. ..|.|:.:.|.|:|:|..||:||
Zfish   195 TMNDLIFEWQ-EKGPVQVADGLTLPQFILKDESDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLI 258

  Fly   321 QVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALDWFLLMS 385
            |:|:|.:|||:||||||||:.:|...||:|.:|:|||::|.|..|||.||||.|..|:|.::.:.
Zfish   259 QMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRTSLPKVSYVKAIDIWMAVC 323

  Fly   386 FLYCIATLLEFAGVHYFTKLGS---------GESPQLEDQWEDICIANSLSDHAGEVDGDGEADA 441
            .|:..:.|||:|.|::.::...         .:|.:..||..|..:|.||...      :|...|
Zfish   324 LLFVFSALLEYAAVNFVSRQHKELLRFRRRRKKSGKTFDQTFDEELAESLRRI------NGSRSA 382

  Fly   442 DP----FADEDSSNGSENDDNEAGASESVES-KSGVCVCNKNDALGLEYEVSLQNSLAGAGFLKR 501
            :|    ....|.:|..|.:..|:..|.:..: |.|......|:|                     
Zfish   383 EPVYGSMGQLDQTNDMEEEVRESRLSFTPNAGKDGAVPKTANNA--------------------- 426

  Fly   502 NAIFCPTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMCLKSDNSFRKQRERNAAAQKSEQGGAN 566
                                .||.:||.                         .|..||.:....
Zfish   427 --------------------ATTPSEPA-------------------------VAPGKSHEEMRK 446

  Fly   567 CYVNSVSLIDRVARIAFPMSFAFLNLLYWWAYGMYKKE 604
            .:::....||.|:|..||::|.|.|:.||..|.:.:.|
Zfish   447 LFIDRAKKIDTVSRAGFPLAFLFFNIFYWVLYKILRHE 484

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 169/524 (32%)
Neur_chan_LBD 111..315 CDD:280998 83/208 (40%)
Neur_chan_memb 322..>403 CDD:280999 39/80 (49%)
glra3XP_021333244.1 LIC 13..478 CDD:273305 172/541 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.