DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and lgc-55

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_507870.2 Gene:lgc-55 / 180312 WormBaseID:WBGene00013746 Length:538 Species:Caenorhabditis elegans


Alignment Length:565 Identity:143/565 - (25%)
Similarity:246/565 - (43%) Gaps:106/565 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 TNGSLKR----SQNATNLSYSSSE-----ISNQRRVRRKAAADMLSRNISMILENLLKRYEQSQL 124
            :|||...    ::....||..|.|     :..|   ..|||        :.||..||.:|:::.:
 Worm    51 SNGSCAMVSDLARGGLGLSQDSEEDEPFCVLGQ---AEKAA--------TRILTELLSKYDRNLV 104

  Fly   125 PTHGQGVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDKRLSFKGP-----IKSLSLSIKM 184
            |.. :||.  |...:||:.:..:||:....:|...|.|.|.|..|||:..     :.:||||.:|
 Worm   105 PKM-KGVD--VDVELLIQRVSEISEIQSSSTMHILFSQIWHDPGLSFEHEEGAHCLTNLSLSHRM 166

  Fly   185 LDKIWRPDTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPL 249
            :|.||.|:....|.|.|.||....||..|.:..||.:..:.|:.:::.|.|:...|||||..|..
 Worm   167 VDNIWLPNVCIVNSKGSAIHKSPTPNIFLAIFPNGTVWMNYRVVVESPCEMDFSFFPMDRVMCTT 231

  Fly   250 VIGSYGYINQQLIYEWKNQDDAVSFVPGMTLNQFDLISMMHRNFTTVRREGDFSVLHVAFNLKRH 314
            :..||.:...::...||.|...|.|:..:.|..|.:...:|...|.:...|.:..|::....:|.
 Worm   232 IFESYAFNVGKVRLHWKRQGQPVEFIDDVKLPDFHMTKFVHEKATFIYPAGVWDQLNIKLLFRRS 296

  Fly   315 TGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALD 379
            .|::::|:|:|...:|::||:|||:.|.:...||:|.|:|::.|:....:....||||.|...||
 Worm   297 YGFYILQIYLPTYCMVLISWISFWLDRRSLPARVTLGVSSLMALTLQYSNVSRSLPKVSYVKGLD 361

  Fly   380 WFLLMSFLYCIATLLEFAGVHYFTKLGSGESPQLEDQWEDICIANSLSDHAGEVDGDGEADADPF 444
            .|:....:|...:::|.|.|        |...|.:.|..:                   ||.|..
 Worm   362 LFMFGCIVYIFLSIVELAVV--------GSLEQRKQQRTN-------------------ADGDFL 399

  Fly   445 ADEDSSNGSENDDNEAGASESVESKSGV-------CVCNKNDALGLEYEVSLQNSLAGAGFLKRN 502
            :|:|.   .:|......:::|.:|..|.       |...::   |.|:..:...      :.:|.
 Worm   400 SDDDI---KKNIFQRTFSTKSFKSGYGARHHQFSECASPED---GGEWPKTRTE------WAERT 452

  Fly   503 AIFCPTYNDPSYILPNTMERTTQTEPPAVSR--------LHQMWMCLKSDNSFRKQRERNAAAQK 559
            .:.||                 :.|||..:|        .::|.:.::...:.||:|:|..:.:.
 Worm   453 YVECP-----------------EPEPPESNRHPEVENDSNNKMLVLVRQRRASRKRRKRLMSGKL 500

  Fly   560 SEQGGANCYVNSVSLIDRVARIAFPMSFAFLNLLYWWAYGMYKKE 604
            .::..|..       :||..:..||::|.|.||:||..|....|:
 Worm   501 FQRWTAED-------MDRFCQKLFPITFTFCNLIYWMYYTAKSKD 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 134/525 (26%)
Neur_chan_LBD 111..315 CDD:280998 63/208 (30%)
Neur_chan_memb 322..>403 CDD:280999 27/80 (34%)
lgc-55NP_507870.2 Neur_chan_LBD 88..295 CDD:280998 63/217 (29%)
LIC 90..532 CDD:273305 130/507 (26%)
Neur_chan_memb 304..>391 CDD:280999 29/94 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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