DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and lgc-49

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_505841.2 Gene:lgc-49 / 179547 WormBaseID:WBGene00010741 Length:457 Species:Caenorhabditis elegans


Alignment Length:500 Identity:124/500 - (24%)
Similarity:204/500 - (40%) Gaps:119/500 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 ILENLLK--RYEQSQLPTHGQGVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDKRLSFK- 172
            |::.||.  .|.:.::|.. .|||  ||....::::..::|:..|:.||.|..:.|.|..|.|. 
 Worm    57 IIDKLLNGTGYNKFRIPNE-NGVP--VQVEFWVQAITSINEITNDFEMDIYINEMWLDPALKFDH 118

  Fly   173 -GPIK-SLSLSIKMLDKIWRPDTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKATCPM 235
             .|.| :||:|.::|:::|.|::.|.|.|.::||.....|..|.:..||.:..:.|:.:|..|.:
 Worm   119 LNPCKQNLSVSHQVLEQLWTPNSCFVNSKFAEIHDSPFKNVFLMIYPNGTVWVNYRVNVKGPCDL 183

  Fly   236 ELQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQD-DAVSFVPGMTLNQFDLISMMHRNFTTVRRE 299
            .|:.||:|.|.|.|:..|:.|.||::...|..:. :.||....:.|..|:||.:.....:.....
 Worm   184 SLELFPLDIQECHLIYESFNYNNQEVRMRWNEKSAEPVSVTNKIRLPDFELIKIESTRISAPYPA 248

  Fly   300 GDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISLD 364
            |.:..|||....:|...::.:|.|:|..|.:.:||:||.:..:|...|..|.|.::|.:.....:
 Worm   249 GMWDELHVKLVFERRYIWYFMQAYLPTYLTIFISWISFSLGTKAMPARTMLGVNALLAMIFQFGN 313

  Fly   365 SRTDLPKVKYATALDWFLLMSFLYCIATLLEFAGVHYFTKLGSGESPQLEDQWEDICIANSLSDH 429
            ...:||:|.|..|:|.::|:|..:...:|||.|.|.|.||...|...:        |....|.|:
 Worm   314 IMRNLPRVSYVKAIDVWMLVSMTFIFLSLLELAIVGYKTKNEEGSKKK--------CPHKKLLDN 370

  Fly   430 AGEVDGDGEADADPFADEDSSNGSENDDNEAGASESVESKSGVCVCNKNDALGLEYEVSLQNSLA 494
                     .:|.|                          :|:|...|...|.:|     :.|..
 Worm   371 ---------FEASP--------------------------AGLCRYEKRFMLPVE-----RRSAR 395

  Fly   495 GAGFLKRNAIFCPTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMCLKSDNSFRKQRERNAAAQK 559
            ..|.: |..:|...:|                           |                     
 Worm   396 WGGII-RFQVFQDFWN---------------------------W--------------------- 411

  Fly   560 SEQGGANCYVNSVSLIDRVARIAFPMSFAFLNLLYWWAYGMYKKE 604
                       |...||||:.|.||..||..|::||..|  |.|:
 Worm   412 -----------SPEKIDRVSAIMFPACFAIFNIVYWSYY--YNKK 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 121/492 (25%)
Neur_chan_LBD 111..315 CDD:280998 62/209 (30%)
Neur_chan_memb 322..>403 CDD:280999 26/80 (33%)
lgc-49NP_505841.2 LIC 53..439 CDD:273305 121/492 (25%)
Neur_chan_LBD 57..264 CDD:280998 62/209 (30%)
Neur_chan_memb 272..436 CDD:280999 56/271 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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