DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and lgc-37

DIOPT Version :10

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_499662.2 Gene:lgc-37 / 176694 WormBaseID:WBGene00013914 Length:483 Species:Caenorhabditis elegans


Alignment Length:532 Identity:171/532 - (32%)
Similarity:274/532 - (51%) Gaps:100/532 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 YSSSEISNQRRVRRKAAA----DMLSRNISMILENLLKRYEQSQLPTHGQGVPTVVQTNILIRSM 144
            :.|..:.:.:|.|..:.:    ..|.|..:.:|:.:|...:::..|.:....|..|:.:|.||||
 Worm    16 HHSQAVIDMKRQRLSSRSTTYNQTLIRYTTKVLDTILLNQDKNFRPVNPDNSPLQVEVDISIRSM 80

  Fly   145 GPVSELDMDYSMDCYFRQYWRDKRLSFK--GPIK-SLSLSIKMLDKIWRPDTYFYNGKHSQIHMI 206
            |||||.:|::|:||||||.|.|:||:|.  .|.| .:.|:.|||..||.||||..||:.|.:|.:
 Worm    81 GPVSEQNMEFSLDCYFRQKWLDRRLAFTPINPSKPEIPLASKMLKDIWIPDTYIRNGRKSYLHTL 145

  Fly   207 TVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQD-D 270
            ||||.|.|:..:|.:..|.||||::.|.|.|:.||||.|:||:.:||.||.::.::|:||:.: |
 Worm   146 TVPNILFRVRSDGQVHVSQRLTIRSRCQMFLKKFPMDTQACPIEVGSLGYFSKDVVYKWKDVELD 210

  Fly   271 AVSFVPGMTLNQFDLISM--MHRNFTTVR-REGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVL 332
            |..   |.||:|:.::|:  ..||.:..| .:.:.|||:|.|.|:|..||:::|:|.||.|:||:
 Worm   211 AKM---GNTLSQYQVLSLSKSERNVSDFRFSDRNISVLNVYFKLQRQQGYYILQIYTPCTLVVVM 272

  Fly   333 SWVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALDWFLLMSFLYCIATLLEFA 397
            |||||||::||:..||||.:.:||::|||....|||||||.::||||.::|..|::..|.::|:|
 Worm   273 SWVSFWINKEASPARVSLGIMTVLSMSTIGFGLRTDLPKVSHSTALDVYILTCFVFLFAAMVEYA 337

  Fly   398 GVHYFTKLGSGESPQLEDQWEDICIANSLSDHAGEVDGDGEADADPFADEDSSNGSENDDNEAGA 462
            .::|.               :.:.|...:.|..|                               
 Worm   338 VINYA---------------QIVYIRKQIHDLKG------------------------------- 356

  Fly   463 SESVESKSGVCVCNKNDALGLEYEVSLQNSLAGAGFLKRNAIFCPTYNDPSYILPNTMERTTQTE 527
                        ..:|.|:|..:...|.      |..:|:.|              .::..|..:
 Worm   357 ------------LEQNTAMGQMFTAGLM------GARRRDTI--------------QVDDLTVEK 389

  Fly   528 PPAVSRLHQMW--MCLKSD----NSFRKQRERNAAAQKSEQGGANCYVNSVSLIDRVARIAFPMS 586
            ..|..:....|  :|.|.:    :.|.:...:.|.|:|:.:.|....|  |:.||..:::|||..
 Worm   390 EEARLKAVPWWKKLCFKDEQGNTSMFYRMAVKAAIAKKTLRNGDPAEV--VNKIDNFSKLAFPTL 452

  Fly   587 FAFLNLLYWWAY 598
            :...|:.||.||
 Worm   453 YIIFNVFYWVAY 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:455710 168/522 (32%)
LGIC_ECD_GABAR_GRD-like 132..314 CDD:349808 86/188 (46%)
Cys-loop 233..247 CDD:349808 8/13 (62%)
lgc-37NP_499662.2 LIC 44..464 CDD:455710 164/502 (33%)
LGIC_ECD 68..254 CDD:475126 86/188 (46%)

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