DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and lgc-37

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_499662.2 Gene:lgc-37 / 176694 WormBaseID:WBGene00013914 Length:483 Species:Caenorhabditis elegans


Alignment Length:532 Identity:171/532 - (32%)
Similarity:274/532 - (51%) Gaps:100/532 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 YSSSEISNQRRVRRKAAA----DMLSRNISMILENLLKRYEQSQLPTHGQGVPTVVQTNILIRSM 144
            :.|..:.:.:|.|..:.:    ..|.|..:.:|:.:|...:::..|.:....|..|:.:|.||||
 Worm    16 HHSQAVIDMKRQRLSSRSTTYNQTLIRYTTKVLDTILLNQDKNFRPVNPDNSPLQVEVDISIRSM 80

  Fly   145 GPVSELDMDYSMDCYFRQYWRDKRLSFK--GPIK-SLSLSIKMLDKIWRPDTYFYNGKHSQIHMI 206
            |||||.:|::|:||||||.|.|:||:|.  .|.| .:.|:.|||..||.||||..||:.|.:|.:
 Worm    81 GPVSEQNMEFSLDCYFRQKWLDRRLAFTPINPSKPEIPLASKMLKDIWIPDTYIRNGRKSYLHTL 145

  Fly   207 TVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQD-D 270
            ||||.|.|:..:|.:..|.||||::.|.|.|:.||||.|:||:.:||.||.::.::|:||:.: |
 Worm   146 TVPNILFRVRSDGQVHVSQRLTIRSRCQMFLKKFPMDTQACPIEVGSLGYFSKDVVYKWKDVELD 210

  Fly   271 AVSFVPGMTLNQFDLISM--MHRNFTTVR-REGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVL 332
            |..   |.||:|:.::|:  ..||.:..| .:.:.|||:|.|.|:|..||:::|:|.||.|:||:
 Worm   211 AKM---GNTLSQYQVLSLSKSERNVSDFRFSDRNISVLNVYFKLQRQQGYYILQIYTPCTLVVVM 272

  Fly   333 SWVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALDWFLLMSFLYCIATLLEFA 397
            |||||||::||:..||||.:.:||::|||....|||||||.::||||.::|..|::..|.::|:|
 Worm   273 SWVSFWINKEASPARVSLGIMTVLSMSTIGFGLRTDLPKVSHSTALDVYILTCFVFLFAAMVEYA 337

  Fly   398 GVHYFTKLGSGESPQLEDQWEDICIANSLSDHAGEVDGDGEADADPFADEDSSNGSENDDNEAGA 462
            .::|.               :.:.|...:.|..|                               
 Worm   338 VINYA---------------QIVYIRKQIHDLKG------------------------------- 356

  Fly   463 SESVESKSGVCVCNKNDALGLEYEVSLQNSLAGAGFLKRNAIFCPTYNDPSYILPNTMERTTQTE 527
                        ..:|.|:|..:...|.      |..:|:.|              .::..|..:
 Worm   357 ------------LEQNTAMGQMFTAGLM------GARRRDTI--------------QVDDLTVEK 389

  Fly   528 PPAVSRLHQMW--MCLKSD----NSFRKQRERNAAAQKSEQGGANCYVNSVSLIDRVARIAFPMS 586
            ..|..:....|  :|.|.:    :.|.:...:.|.|:|:.:.|....|  |:.||..:::|||..
 Worm   390 EEARLKAVPWWKKLCFKDEQGNTSMFYRMAVKAAIAKKTLRNGDPAEV--VNKIDNFSKLAFPTL 452

  Fly   587 FAFLNLLYWWAY 598
            :...|:.||.||
 Worm   453 YIIFNVFYWVAY 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 168/522 (32%)
Neur_chan_LBD 111..315 CDD:280998 90/210 (43%)
Neur_chan_memb 322..>403 CDD:280999 41/80 (51%)
lgc-37NP_499662.2 LIC 44..464 CDD:273305 164/502 (33%)
Neur_chan_LBD 45..254 CDD:280998 89/211 (42%)
Neur_chan_memb 262..461 CDD:280999 69/278 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H20220
Inparanoid 1 1.050 324 1.000 Inparanoid score I1470
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3154
SonicParanoid 1 1.000 - - X127
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.000

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