DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and lgc-46

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_497338.2 Gene:lgc-46 / 175279 WormBaseID:WBGene00022106 Length:508 Species:Caenorhabditis elegans


Alignment Length:574 Identity:132/574 - (22%)
Similarity:232/574 - (40%) Gaps:137/574 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 KTNGSLKRSQNATNLSYSSSEISNQRRVRRKAAADMLSRNI---SMILENLLKRYEQSQLPTHGQ 129
            :.:.||:|.  ..|..:...|....:.:...|..:..::|.   |.||..::..|.:.::|    
 Worm    25 RNSPSLRRL--TRNYDWEVDEHGGLKPIINPAKVERATKNCANDSFILGTIMSNYNRHKIP---- 83

  Fly   130 GVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDKRL--SFKGPIK-SLSLSIKMLDKIWRP 191
            |....|:..:.::.:..:|::..|:.:|.|..:.|.|..|  :|..|.| :|||:..:|:|:|.|
 Worm    84 GGQVDVEVEVWVQEITTISDITSDFQLDIYIYETWYDPALNYAFMNPCKYNLSLNSVLLEKLWTP 148

  Fly   192 DTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYGY 256
            ::.|.|.|.:.||....||..|.:..||.:..:.||.::..|.|:|..||.|..:|.|...|:.|
 Worm   149 NSCFINSKTADIHKSPFPNIFLMIYANGTVWTNYRLKLQGPCIMDLTKFPFDNVTCSLTFESFNY 213

  Fly   257 INQQLIYEW------KNQDDAVSFVPGMTLNQFDLISMMHRNFTTVRREGDFSVLHVAFNLKRHT 315
            ...::..:|      |.:|.       |.|..::|:.:.....|.....|.:..|.::|..||..
 Worm   214 NTDEVKMDWSVNGVQKMRDK-------MELADYELVDIHKIRTTEEYPAGYWHELTMSFEFKRRA 271

  Fly   316 GYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALD- 379
            |::::|.|:|..|.:.:||:||.:..:|...|..|.|.|:|.::....:...:||:|.|..|:| 
 Worm   272 GWYILQAYLPTYLTICISWISFALGSKAIPARTMLGVNSLLAMTFQFGNIIRNLPRVSYVKAIDV 336

  Fly   380 WFL-LMSFLYCIATLLEFAGVHYFTKLGSGESPQLEDQWEDICI-------------------AN 424
            |.| .|:|::|  :|||.|.|.|.::        .|:.....|:                   ||
 Worm   337 WMLSCMTFVFC--SLLELAWVGYLSR--------EEEPTSAKCLQPSAQVAPKPCHPPPVQQNAN 391

  Fly   425 SLSDHAGEVDGDGEADADPFADEDSSNGSENDDN----------EAGASESVESKSGVCVCNKND 479
            :.|.|        .....|..:|:|:..|..|::          ....:.:::|.|..|.|    
 Worm   392 NSSVH--------RRQKQPKNEEESALLSLRDNDYGYIPPGFGLNGNVANAMKSFSSSCSC---- 444

  Fly   480 ALGLEYEVSLQNSLAGAGFLKRNAIFCPTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMCLKSD 544
                                           :|:.:: |.|....:|.|.:.|            
 Worm   445 -------------------------------EPTNVV-NLMLDEAETIPTSTS------------ 465

  Fly   545 NSFRKQRERNAAAQKSEQGGANCYVNSVSLIDRVARIAFPMSFAFLNLLYWWAY 598
            :|..:::.|...|.|               ||.|:...||..|...|:.||..|
 Worm   466 SSLSRKQRREILAHK---------------IDSVSVFMFPFLFVLFNIAYWQHY 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 126/548 (23%)
Neur_chan_LBD 111..315 CDD:280998 57/212 (27%)
Neur_chan_memb 322..>403 CDD:280999 30/82 (37%)
lgc-46NP_497338.2 Neur_chan_LBD 73..504 CDD:332142 121/522 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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