DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and Gabrg3

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:XP_017177467.1 Gene:Gabrg3 / 14407 MGIID:95624 Length:468 Species:Mus musculus


Alignment Length:526 Identity:162/526 - (30%)
Similarity:245/526 - (46%) Gaps:109/526 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 SNQRRVRRKAAADMLSRNISMILENLLKRYEQSQLPTHGQGVPTVVQTNILIRSMGPVSELDMDY 154
            |||:.|....:.|   .::::||..||:.|::...|..|. .|||:..:|.:.|:||||.::|:|
Mouse    32 SNQKWVLAPKSQD---TDVTLILNKLLREYDKKLRPDIGI-KPTVIDVDIYVNSIGPVSSINMEY 92

  Fly   155 SMDCYFRQYWRDKRLSFKGPIKSLSLSIKMLDKIWRPDTYFYNGKHSQIHMITVPNKLLRLDQNG 219
            .:|.:|.|.|.|.||.|...:|.|:|:..|:..||.|||.|.|.|.::.|.||.||:|||:..:|
Mouse    93 QIDIFFAQTWTDSRLRFNSTMKILTLNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDG 157

  Fly   220 GILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQDDAVSFVPGMTLNQFD 284
            .|||::||||.|.|.::|.|||||..:|||...||||..:::||.|:......:......|.|||
Mouse   158 KILYTLRLTINAECQLQLHNFPMDAHACPLTFSSYGYPKEEMIYRWRKNSVEAADQKSWRLYQFD 222

  Fly   285 LISMMHRNFTTVRREGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVS 349
            .:.:.:.........||:.|:.:.|.|.|..|||.||.|:||||.||||||||||.::||..|.:
Mouse   223 FMGLRNTTEIVTTSAGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTT 287

  Fly   350 LCVTSVLTLSTISLDSRTDLPKVKYATALDWFLLMSFLYCIATLLEFAGVHYFTKLGSGESPQLE 414
            |.:|:|||::|:|..:|..||:|.|.||:|.|:.:.||:..|.|:|:|.::|::   |...|   
Mouse   288 LGITTVLTMTTLSTIARKSLPRVSYVTAMDLFVTVCFLFVFAALMEYATLNYYS---SCRKP--- 346

  Fly   415 DQWEDICIANSLSDHAGEVDGDGEADADPFADEDSSNGSENDDNEAGASESVESKSGVCVCNKND 479
                                                              ::..|....:.:.:.
Mouse   347 --------------------------------------------------TIRKKKTSQLLHPDS 361

  Fly   480 ALGLEYEVSLQNSLAGAGFLKRNAIFCPTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMCLKSD 544
            ...:...:|||                         .|:.........||.|       |...::
Mouse   362 TRWIPDRISLQ-------------------------APSNYSLLDMRPPPPV-------MITLNN 394

  Fly   545 NSFRKQRERNAAAQ----KSEQGGANCYVN-------------SVSLIDRVARIAFPMSFAFLNL 592
            :.:.::.|.....:    |..|....||..             .||.:|..:|:.||.||...||
Mouse   395 SMYWQEFEDTCVYECLDGKDCQSFFCCYEECKSGSWRRGRIHIDVSELDSYSRVFFPTSFLLFNL 459

  Fly   593 LYWWAY 598
            :||..|
Mouse   460 VYWVGY 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 159/522 (30%)
Neur_chan_LBD 111..315 CDD:280998 82/203 (40%)
Neur_chan_memb 322..>403 CDD:280999 41/80 (51%)
Gabrg3XP_017177467.1 LIC 50..465 CDD:273305 156/503 (31%)
LGIC_ECD_GABAAR_G 71..252 CDD:349801 73/180 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I3055
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm43906
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X127
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.920

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