DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and Gabra4

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:NP_001345970.1 Gene:Gabra4 / 14397 MGIID:95616 Length:578 Species:Mus musculus


Alignment Length:560 Identity:183/560 - (32%)
Similarity:270/560 - (48%) Gaps:109/560 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 NISMILENLLKRYEQSQLPTHG-------------------------QGVPTVVQTNILIRSMGP 146
            |.:.||::||..|:....|..|                         .|..|.|:|:|.:.|.||
Mouse    47 NFTRILDSLLDGYDNRLRPGFGGTDCFKTCKCALSVRLWSACLFVEILGPVTEVKTDIYVTSFGP 111

  Fly   147 VSELDMDYSMDCYFRQYWRDKRLSFKGPIKSLSLSIKMLDKIWRPDTYFYNGKHSQIHMITVPNK 211
            ||:::|:|:||.:|||.|.||||.:.|||:.|.|:..|:.|:|.|||:|.|||.|..|.:|.|||
Mouse   112 VSDVEMEYTMDVFFRQTWIDKRLKYDGPIEILRLNNMMVTKVWTPDTFFRNGKKSVSHNMTAPNK 176

  Fly   212 LLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQDDAVSFVP 276
            |.|:.:||.|||:|||||.|.|||.|.:||||..:|||..|||.|...::||.|....:....||
Mouse   177 LFRIMRNGTILYTMRLTISAECPMRLVDFPMDGHACPLKFGSYAYPKSEMIYTWTKGPEKSVEVP 241

  Fly   277 --GMTLNQFDLISMMHRNFTTVRREGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFWI 339
              ..:|.|:|||.....:.|.....|::.|:.|.|:|:|..|||:||.|:|||:.|:||.|||||
Mouse   242 KESSSLVQYDLIGQTVSSETIKSITGEYIVMTVYFHLRRKMGYFMIQTYIPCIMTVILSQVSFWI 306

  Fly   340 HREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALDWFLLMSFLYCIATLLEFAGVHYFTK 404
            ::|:...|....:|:|||::|:|:.:|..||||.||||:|||:.:.|.:..:.|:|||.|:|||.
Mouse   307 NKESVPARTVFGITTVLTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTN 371

  Fly   405 LGSGE--------------SPQLEDQWEDICIANS-------------------------LSDHA 430
            :...:              :|.|:::..:..:.|:                         :.:|:
Mouse   372 IQMQKAKKKISKPPPEVPAAPVLKEKHTETSLQNTHANLNMRKRTNALVHSESDVKSRTEVGNHS 436

  Fly   431 GEVDGDGE-ADADPFADEDSSNGSENDDNEAGASESVESKS-GVCVCNKNDALGLEYEVSLQNSL 493
            .:.....| ::|.|.|...|   |.|..:.|.|:|::.:.: |:.........|.....||.::.
Mouse   437 SKTSAVQESSEATPKAHLAS---SPNPFSRANAAETMSAAARGLSSAASPSPHGTLRPASLGSAS 498

  Fly   494 AGAGFLKRNAIFCPTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMCLKSDNSFRKQRERNAAAQ 558
            ....|..|......|.|     ........:.|.||                         .|..
Mouse   499 TRPAFGSRLGRIKTTVN-----TTGAAGNVSATPPP-------------------------PAPP 533

  Fly   559 KSEQGGANCYVNSVSLIDRVARIAFPMSFAFLNLLYWWAY 598
            .|..|        .|.||:.|||.||::|...|::||..|
Mouse   534 PSGSG--------TSKIDKYARILFPVTFGAFNMVYWVVY 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 182/558 (33%)
Neur_chan_LBD 111..315 CDD:280998 95/230 (41%)
Neur_chan_memb 322..>403 CDD:280999 39/80 (49%)
Gabra4NP_001345970.1 Neur_chan_LBD 13..565 CDD:332142 182/558 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 199 1.000 Domainoid score I3055
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 1 1.000 - - FOG0000415
OrthoInspector 1 1.000 - - otm43906
orthoMCL 1 0.900 - - OOG6_105663
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X127
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.820

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