DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and glra1

DIOPT Version :10

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:XP_002940962.2 Gene:glra1 / 100498379 XenbaseID:XB-GENE-6035798 Length:450 Species:Xenopus tropicalis


Alignment Length:537 Identity:160/537 - (29%)
Similarity:255/537 - (47%) Gaps:130/537 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 SSSEISNQRRVRRKAAADMLSRNISMILENLLKRYE--QSQLPTHGQGVPTVVQTNILIRSMGPV 147
            :|.|:....|    ::|.::|.  |..|:.|:.:..  .:::..:.:|.|..|..||.|.|.|.:
 Frog    22 ASKEVGASAR----SSAKLMSP--SDFLDKLMGKISGYDARIRPNFKGPPVNVSCNIFINSFGSI 80

  Fly   148 SELDMDYSMDCYFRQYWRDKRLSF-KGPIKSLSLSIKMLDKIWRPDTYFYNGKHSQIHMITVPNK 211
            :|..|||.::.:.||.|.|.||:: :.|..||.|...|||.||:||.:|.|.|.:..|.||..||
 Frog    81 AETTMDYRLNIFLRQQWNDPRLAYSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEITTDNK 145

  Fly   212 LLRLDQNGGILYSMRLTIKATCPMELQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQDDAVSFVP 276
            |||:.:||.:|||:|||:...|||:|:|||||.|:|.:.:.|:||....||:||: :..||....
 Frog   146 LLRIFKNGNVLYSIRLTLTLACPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWE-EVGAVQVAE 209

  Fly   277 GMTLNQFDL-----ISMMHRNFTTVRREGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVS 336
            |:||.||.|     :....::::|    |.|:.:...|:|:|..||:|||:|:|.:|||:|||||
 Frog   210 GLTLPQFILKEEKDLRYCTKHYST----GKFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWVS 270

  Fly   337 FWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVKYATALDWFLLMSFLYCIATLLEFAGVHY 401
            |||:.:|...||.|.:|:|||::|.|..||..||||.|..|:|.::.:..|:..:.|||:|.|::
 Frog   271 FWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNF 335

  Fly   402 FTKLGSGESPQLEDQWEDICIANSLSDHAGEVDGDGEADADPFADEDSSNGSENDDNEAG----- 461
            .::           |.:::........|..|                       |:|..|     
 Frog   336 VSR-----------QHKELLRFRRRRRHHKE-----------------------DENAEGRFSFA 366

  Fly   462 ----ASESVESKSGVCVCNKNDALGLEYEVSLQNSLAGAGFLKRNAIFCPTYNDPSYILPNTMER 522
                ....:::|.|:.:...|:                              |:|:         
 Frog   367 AYGMGPACLQAKDGISMKGNNN------------------------------NNPA--------- 392

  Fly   523 TTQTEPPAVSRLHQMWMCLKSDNSFRKQRERNAAAQKSEQGGANCYVNSVSLIDRVARIAFPMSF 587
             :..:|.:           ||.:..||                 .:::....||:|:||.||:.|
 Frog   393 -SSAQPVS-----------KSPDEMRK-----------------LFISRAKKIDKVSRIGFPLVF 428

  Fly   588 AFLNLLYWWAYGMYKKE 604
            ...|..||..|.:.:.|
 Frog   429 LIFNTFYWIIYKIVRSE 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:455710 156/522 (30%)
LGIC_ECD_GABAR_GRD-like 132..314 CDD:349808 78/187 (42%)
Cys-loop 233..247 CDD:349808 10/13 (77%)
glra1XP_002940962.2 LIC 10..439 CDD:273305 158/529 (30%)

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