DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8916 and gabrp

DIOPT Version :10

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:XP_017948119.2 Gene:gabrp / 100498164 XenbaseID:XB-GENE-1012959 Length:401 Species:Xenopus tropicalis


Alignment Length:485 Identity:133/485 - (27%)
Similarity:218/485 - (44%) Gaps:97/485 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 LLKRYEQSQLPTHGQGVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDKRLSFKGPIKSLS 179
            ::|.|.:...|...: .|..:..::.:.|:..|||.:|||:.....||.|.|:||.|:|. :|::
 Frog    10 IMKDYNKYLRPKFNE-KPIEIAVSLEVASIDAVSEENMDYTATINLRQRWTDERLVFEGN-RSIT 72

  Fly   180 LSIKMLDKIWRPDTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDR 244
            |..::::.:|.||||..:.|.|.:|.:||.|:|:||..||.:||::|:|....|.|:|..:||||
 Frog    73 LDARLVESLWVPDTYIVDSKKSFLHDVTVENRLVRLFANGTVLYAIRITTTVACKMDLTKYPMDR 137

  Fly   245 QSCPLVIGSYGYINQQLIYEWKNQDDAVSFVPGMTLNQFDLISMMHRNFTTVRREGDFSVLHVAF 309
            |:|.|.:.|:||..:.|.|.|...:|:|..:..:.|.|:.:......|.......|::..|.:.|
 Frog   138 QTCKLQLESWGYSEKDLTYVWMRANDSVRGMDHLQLAQYTVEQYYTTNSIGKDETGNYPRLALCF 202

  Fly   310 NLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVK- 373
            .|:|:..||:::.|:|..|:||||||||||...:...|....||:||.::||.:.||.:.|... 
 Frog   203 ILRRNVVYFILETYIPSALLVVLSWVSFWISMSSVPARTCFGVTTVLAMTTIMMGSRFNFPTANC 267

  Fly   374 YATALDWFLLMSFLYCIATLLEFAGVHYFTKLGSGESPQLEDQWEDICIANSLSDHAGEVDGDGE 438
            ...|:|.:|.:.|.:....|||:|..||.::|.|..:.:.        |.|||.:...::.....
 Frog   268 IIKAIDVYLGICFSFVFGALLEYAFAHYCSELNSAVNKEK--------IKNSLEEPEHDISSVLI 324

  Fly   439 ADADPFADEDSSNGSENDDNEAGASESVESKSGVCVCNKNDALGLEYEVSLQNSLAGAGFLKRNA 503
            |     .|....|..||....|....|                                 ||.:.
 Frog   325 A-----CDSKQLNRKENQTENAPEKNS---------------------------------LKNSV 351

  Fly   504 IFCPTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMCLKSDNSFRKQRERNAAAQKSEQGGANCY 568
            ||                              ::|:.:|    ..:.::.|              
 Frog   352 IF------------------------------KLWLKIK----IIRLKKFN-------------- 368

  Fly   569 VNSVSLIDRVARIAFPMSFAFLNLLYWWAY 598
            |.:...:||.:|..||:.|..:|::||..|
 Frog   369 VTNPENVDRYSRTVFPLIFLIINIIYWTYY 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:455710 132/483 (27%)
LGIC_ECD_GABAR_GRD-like 132..314 CDD:349808 63/181 (35%)
Cys-loop 233..247 CDD:349808 8/13 (62%)
gabrpXP_017948119.2 LIC 7..398 CDD:455710 132/483 (27%)
LGIC_ECD 26..207 CDD:475126 63/181 (35%)

Return to query results.
Submit another query.