DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and gabrp

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:XP_017948119.2 Gene:gabrp / 100498164 XenbaseID:XB-GENE-1012959 Length:401 Species:Xenopus tropicalis


Alignment Length:485 Identity:133/485 - (27%)
Similarity:218/485 - (44%) Gaps:97/485 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 LLKRYEQSQLPTHGQGVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDKRLSFKGPIKSLS 179
            ::|.|.:...|...: .|..:..::.:.|:..|||.:|||:.....||.|.|:||.|:|. :|::
 Frog    10 IMKDYNKYLRPKFNE-KPIEIAVSLEVASIDAVSEENMDYTATINLRQRWTDERLVFEGN-RSIT 72

  Fly   180 LSIKMLDKIWRPDTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKATCPMELQNFPMDR 244
            |..::::.:|.||||..:.|.|.:|.:||.|:|:||..||.:||::|:|....|.|:|..:||||
 Frog    73 LDARLVESLWVPDTYIVDSKKSFLHDVTVENRLVRLFANGTVLYAIRITTTVACKMDLTKYPMDR 137

  Fly   245 QSCPLVIGSYGYINQQLIYEWKNQDDAVSFVPGMTLNQFDLISMMHRNFTTVRREGDFSVLHVAF 309
            |:|.|.:.|:||..:.|.|.|...:|:|..:..:.|.|:.:......|.......|::..|.:.|
 Frog   138 QTCKLQLESWGYSEKDLTYVWMRANDSVRGMDHLQLAQYTVEQYYTTNSIGKDETGNYPRLALCF 202

  Fly   310 NLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISLDSRTDLPKVK- 373
            .|:|:..||:::.|:|..|:||||||||||...:...|....||:||.::||.:.||.:.|... 
 Frog   203 ILRRNVVYFILETYIPSALLVVLSWVSFWISMSSVPARTCFGVTTVLAMTTIMMGSRFNFPTANC 267

  Fly   374 YATALDWFLLMSFLYCIATLLEFAGVHYFTKLGSGESPQLEDQWEDICIANSLSDHAGEVDGDGE 438
            ...|:|.:|.:.|.:....|||:|..||.::|.|..:.:.        |.|||.:...::.....
 Frog   268 IIKAIDVYLGICFSFVFGALLEYAFAHYCSELNSAVNKEK--------IKNSLEEPEHDISSVLI 324

  Fly   439 ADADPFADEDSSNGSENDDNEAGASESVESKSGVCVCNKNDALGLEYEVSLQNSLAGAGFLKRNA 503
            |     .|....|..||....|....|                                 ||.:.
 Frog   325 A-----CDSKQLNRKENQTENAPEKNS---------------------------------LKNSV 351

  Fly   504 IFCPTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMCLKSDNSFRKQRERNAAAQKSEQGGANCY 568
            ||                              ::|:.:|    ..:.::.|              
 Frog   352 IF------------------------------KLWLKIK----IIRLKKFN-------------- 368

  Fly   569 VNSVSLIDRVARIAFPMSFAFLNLLYWWAY 598
            |.:...:||.:|..||:.|..:|::||..|
 Frog   369 VTNPENVDRYSRTVFPLIFLIINIIYWTYY 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 132/483 (27%)
Neur_chan_LBD 111..315 CDD:280998 67/199 (34%)
Neur_chan_memb 322..>403 CDD:280999 33/81 (41%)
gabrpXP_017948119.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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