DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8916 and glra3

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:XP_002933371.1 Gene:glra3 / 100488938 XenbaseID:XB-GENE-1011160 Length:449 Species:Xenopus tropicalis


Alignment Length:501 Identity:155/501 - (30%)
Similarity:240/501 - (47%) Gaps:107/501 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 SMILENLLKR---YEQSQLPTHGQGVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYWRDKRLS 170
            |..|:.|:.|   |: :::..:.:|.|..|..||.:.|.|.::|..|||.::.:.||.|.|.||:
 Frog    44 SDFLDKLMGRTSGYD-ARIRPNFKGPPVNVTCNIFVNSFGSIAETTMDYRLNIFLRQKWNDPRLA 107

  Fly   171 F-KGPIKSLSLSIKMLDKIWRPDTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTIKATCP 234
            : :.|..||.|...|||.||:||.:|.|.|.:..|.:|..|||||:.::|.:|||:|||:..:||
 Frog   108 YSEYPDDSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKDGNVLYSIRLTLTLSCP 172

  Fly   235 MELQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQDDAVSFVPGMTLNQFDLISMMHRNFTTVR-R 298
            |:|:|||||.|:|.:.:.|:||....||:||: ::..|....|:||.||.|.......:.|.. .
 Frog   173 MDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQ-ENGPVQIADGLTLPQFVLKEEKDLRYCTKHYN 236

  Fly   299 EGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLTLSTISL 363
            .|.|:.:.|.|:|:|..||:|||:|:|.:|||:||||||||:.:|...||:|.:|:|||::|.|.
 Frog   237 TGKFTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSS 301

  Fly   364 DSRTDLPKVKYATALDWFLLMSFLYCIATLLEFAGVHYFTKLGSGESPQLEDQWEDICIANSLSD 428
            .||..||||.|..|:|.::.:..|:..:.|||:|.|::.::           |.:::.       
 Frog   302 GSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSR-----------QHKELL------- 348

  Fly   429 HAGEVDGDGEADADPFADEDSSNGSENDDNEAGASESVESKSGVCVCNKNDALGLEYEVSLQNSL 493
               ......:.|.|     |....|.......|....:::|.||   |....|            
 Frog   349 ---RFRRKRKKDRD-----DDVRESRFSFTAYGMGPCLQAKDGV---NPKGPL------------ 390

  Fly   494 AGAGFLKRNAIFCPTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMCLKSDNSFRKQRERNAAAQ 558
                    ||                        |||.          |:....||         
 Frog   391 --------NA------------------------PPAP----------KTHEEMRK--------- 404

  Fly   559 KSEQGGANCYVNSVSLIDRVARIAFPMSFAFLNLLYWWAYGMYKKE 604
                    .:::....||.::|..||::|...|:.||..|.:.:.|
 Frog   405 --------VFIDRAKKIDTLSRACFPLAFLIFNIFYWVIYKILRHE 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 153/493 (31%)
Neur_chan_LBD 111..315 CDD:280998 81/208 (39%)
Neur_chan_memb 322..>403 CDD:280999 38/80 (48%)
glra3XP_002933371.1 LIC 12..436 CDD:273305 153/493 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.