DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8916 and gabra6

DIOPT Version :9

Sequence 1:NP_573090.3 Gene:CG8916 / 32553 FlyBaseID:FBgn0030707 Length:612 Species:Drosophila melanogaster
Sequence 2:XP_031754593.1 Gene:gabra6 / 100488862 XenbaseID:XB-GENE-6049732 Length:455 Species:Xenopus tropicalis


Alignment Length:501 Identity:185/501 - (36%)
Similarity:260/501 - (51%) Gaps:83/501 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 AADMLSRNISMILENLLKRYEQSQLPTHGQGVPTVVQTNILIRSMGPVSELDMDYSMDCYFRQYW 164
            ||::.|.||:.||:.||..|:....|:.| |..|.|:|:|.:.|.||||::||:|:||.:|||.|
 Frog    24 AANLHSENITRILDRLLDGYDNRLRPSFG-GPVTEVKTDIYVTSFGPVSDVDMEYTMDIFFRQTW 87

  Fly   165 RDKRLSFKGPIKSLSLSIKMLDKIWRPDTYFYNGKHSQIHMITVPNKLLRLDQNGGILYSMRLTI 229
            .|:||.|.||.:.|.|:..|:.|||.|||:|.|||.|..|.:|.||||.|:.|||.:||:|||||
 Frog    88 VDERLKFDGPTEILRLNNLMVSKIWTPDTFFRNGKKSIAHNMTTPNKLFRIMQNGTVLYTMRLTI 152

  Fly   230 KATCPMELQNFPMDRQSCPLVIGSYGYINQQLIYEWKNQDDAVSFVP--GMTLNQFDLISMMHRN 292
            ||.|||.|.|||||..:|||..|||.|...:::|.||........||  ..:|.|:||:.....:
 Frog   153 KAECPMRLMNFPMDGHACPLKFGSYAYPKSEIVYTWKKGPLYSVEVPEESSSLLQYDLVGQKVSS 217

  Fly   293 FTTVRREGDFSVLHVAFNLKRHTGYFLIQVYVPCILIVVLSWVSFWIHREATSDRVSLCVTSVLT 357
            .|.:...|::|:..|.|.|:|..||::|..|:||.:.||||.|.|||::|:...|....:|:|||
 Frog   218 ETLLSNTGEYSLQVVMFFLQRKIGYYIIHTYIPCSMTVVLSQVVFWINKESVPARTVAGITTVLT 282

  Fly   358 LSTISLDSRTDLPKVKYATALDWFLLMSFLYCIATLLEFAGVHYFTKLGSGESPQLEDQWEDICI 422
            ::|:|:.:|...|||.||||:|||:.:.|.:..:.|:|||.|:|||.|      |::........
 Frog   283 MTTLSISARHSFPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNL------QIQKTMMKAAK 341

  Fly   423 ANSLSDHAGEVDGDGEADADPFADEDSSNGSENDDNEAGASESVESKSGVCVCNKNDALGLEYEV 487
            ..:|:......:.:       |.....||                       ||....:.   .|
 Frog   342 KAALAAATARAENE-------FVTLSDSN-----------------------CNLKKRIN---SV 373

  Fly   488 SLQNSLAGAGFLKRNAIFCPTYNDPSYILPNTMERTTQTEPPAVSRLHQMWMCLKSDNSFRKQRE 552
            :.|.:.:..|.|       |.|.|..|        ..||:.|  :|.|.:     ||.:      
 Frog   374 ASQGNQSTEGDL-------PLYEDSPY--------NEQTDIP--TRDHML-----SDTT------ 410

  Fly   553 RNAAAQKSEQGGANCYVNSVSLIDRVARIAFPMSFAFLNLLYWWAY 598
                  .|:..|       .|.||:.|||.||:|||..||:||..|
 Frog   411 ------SSQHTG-------TSKIDKYARILFPLSFAGFNLVYWVVY 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8916NP_573090.3 LIC 92..598 CDD:273305 184/499 (37%)
Neur_chan_LBD 111..315 CDD:280998 97/205 (47%)
Neur_chan_memb 322..>403 CDD:280999 37/80 (46%)
gabra6XP_031754593.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 203 1.000 Domainoid score I2891
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H20220
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 1 1.000 - - FOG0000415
OrthoInspector 1 1.000 - - otm49077
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X127
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
99.020

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