DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrp4 and vldlr

DIOPT Version :10

Sequence 1:NP_727914.1 Gene:Lrp4 / 32552 FlyBaseID:FBgn0030706 Length:2009 Species:Drosophila melanogaster
Sequence 2:XP_002934223.1 Gene:vldlr / 733485 XenbaseID:XB-GENE-971958 Length:868 Species:Xenopus tropicalis


Alignment Length:860 Identity:282/860 - (32%)
Similarity:402/860 - (46%) Gaps:128/860 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 CEKTGIHVMCPRTFRCISKYWLCDGDDDCGDYSDETHCGARTNCTDDQFECLNGFCIPRTWVCDG 288
            ||  |....|... .||:..|.||||:||.|.|||:.|..:| |.:..|.|.||.|:||.|.|||
 Frog    31 CE--GSQFQCANG-HCITSLWKCDGDEDCSDGSDESSCVKKT-CAETDFVCNNGLCVPRRWECDG 91

  Fly   289 ENDCKDFSDETH--CNRTTCTDEHFTC--NDGYCISLAFRCDGEHDCNDNSDELKCAAVINSCPE 349
            :.||:|.||||.  |:..||.....:|  ....||.|:::||||.||.:..||..|..:  :|..
 Frog    92 DPDCEDGSDETAELCHMRTCRATEISCGARSTQCIPLSWKCDGESDCPNAEDEENCGNI--TCSP 154

  Fly   350 GEFKCRGGLGGAGGPSGQCILNRFRCDGDNDCGDWSDEENCPQKPSLCTSNEYKCADGTCIPKRW 414
            .||.|         .||:||.:.|.|:|.|||.|.||||||  .|..|.::|::|.:.:|||..|
 Frog   155 AEFTC---------SSGRCISSTFVCNGQNDCSDGSDEENC--VPPTCGAHEFQCKNSSCIPLNW 208

  Fly   415 KCDKEQDCDGGEDEN--DCGSLGSEHPLT---CGSDEFTCNNGRCILKTWLCDGYPDCAAGEDEV 474
            .||.:.||....||:  .||    ..|:.   |.::|..|.:|.||.|.|.|||.|||....||:
 Frog   209 VCDDDSDCADHSDESLEQCG----RQPIAPQKCSANEMPCGSGECIHKKWRCDGDPDCKDKSDEM 269

  Fly   475 ECHLQ-CDLGQFLCPTKQNLTNLKICVHQKHICDGHNECPAGEDEADCPKERKCSEPSP------ 532
            .|..: |...||.|....       |:|....|||..:|..|.||..|....:||.|..      
 Frog   270 NCPSRTCQPDQFKCEDGN-------CIHGSRQCDGVRDCLDGTDEIRCKNVNQCSGPGKFKCRSG 327

  Fly   533 -------------------------------------CEQLCIETTAGSNECACRLGYVMDKNKV 560
                                                 |..||.....| .||.|..|:.:...| 
 Frog   328 ECIDIAKVCNKQKDCKDWSDEPIKECYVNECEVNNGGCSHLCHNLVIG-YECDCTAGFKLIDRK- 390

  Fly   561 NCTDIDECQYLTSPVCSQKCHNTMGSFKCSCETGYILRPDLRSCKALGGAMTLLVANRWDIRRVT 625
            .|.||||||  ...:|||.|.|..|.:||.|..||.:.|....|||:|....|:..||.|||:|.
 Frog   391 TCGDIDECQ--NPEICSQICVNLKGGYKCECSKGYQMDPSTGVCKAVGREPCLIFTNRRDIRKVG 453

  Fly   626 LSNNRYSAIVKGLHNAIALDFHHRKGLMFWSDVSTDVIKMVYMN--------GTRVRDVIKWGLE 682
            |....|..:|:.|.|.:|||...::..:||:|.   :.|.::..        ||.:: |:: .:.
 Frog   454 LERKEYIQLVEQLRNTVALDADIKEQSLFWADT---IQKAIFRAPFDTREKVGTHIK-VVE-DVH 513

  Fly   683 SPGGIAVDWIHDLLFWTDSGTRRVEVSNFQGNLRTVIASYDLDKPRAIVVHPGEALAFWSDWGPN 747
            ||..||:|||:..::|.|:|.:.:.||||.|:.|..:.:..|..|.:|.|.|.....:|||||..
 Frog   514 SPSAIAIDWIYKNIYWMDTGLKTISVSNFDGSKRKTLFNSGLQDPTSIAVDPISGFIYWSDWGEP 578

  Fly   748 PKIERAYMDGTQRKVIISKGVTWPNGLAIDFPNSKIYWADAKQHAIECSNLDGSDRNKILSTH-- 810
            .|||:|.|:|..|:..::..|..|:|:|||...|::||.|:|.|.:...:|:|.||..||.:|  
 Frog   579 AKIEKAGMNGIDRQQFVTADVQRPSGIAIDVVKSRLYWVDSKLHTLSSVDLNGLDRRVILKSHEF 643

  Fly   811 LPHPFALTLFEDTMYWTDWNTKTVSAADKITGKEFRAVHENFHFPMDIHAYHPARQPEYADRCQK 875
            |.||.|||:|||.:||.|...:.:..|:|.:|:|...:..|.:...|:..||...||...:.|.:
 Frog   644 LAHPLALTIFEDRVYWIDGENEAIYGANKFSGQELETLVNNLNEAQDVIVYHELVQPLGRNWCNE 708

  Fly   876 DRRGLRGGCSHLCLP------NKTSRRCGCPIGLSLKEDGKTC----KSTADKLVLVARRKDIRL 930
            ...  .|||.:||||      |.....|.||.|..| ..|::|    |:|.|..|     |...:
 Frog   709 QIE--NGGCKYLCLPAPQISDNSPKYTCVCPDGFEL-NGGRSCRPGSKATMDHTV-----KPTGI 765

  Fly   931 RHLRDNQADPNDVDMIVPLDNLKHAVALDW----------CSDTDFIYWTDVERSTINKAHLNGS 985
            ...:...:..||.:.|..::......:..|          .:...::.|.:.::..:...:.:..
 Frog   766 LPKKPLPSGDNDTNSIHEVNLSAKGTSAAWAILPLLLIAMAASGGYLMWRNWQQKNMKSMNFDNP 830

  Fly   986 YQQRVVHSNLVSPVG 1000
            ...:....:|...:|
 Frog   831 VYLKTTEEDLAIDIG 845

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lrp4NP_727914.1 LDLa 267..301 CDD:238060 19/35 (54%)
LDLa 306..340 CDD:238060 13/35 (37%)
LDLa 347..390 CDD:238060 19/42 (45%)
LDLa 397..431 CDD:238060 13/35 (37%)
LDLa 442..476 CDD:238060 16/33 (48%)
LDLa 480..521 CDD:238060 13/40 (33%)
FXa_inhibition 576..604 CDD:464251 12/27 (44%)
LY 634..671 CDD:214531 10/44 (23%)
LY 680..714 CDD:214531 14/33 (42%)
LY 718..760 CDD:214531 16/41 (39%)
Ldl_recept_b 740..777 CDD:459654 16/36 (44%)
LY 761..803 CDD:214531 14/41 (34%)
LY 806..838 CDD:214531 15/33 (45%)
FXa_inhibition 882..912 CDD:464251 14/35 (40%)
LY 946..985 CDD:214531 3/48 (6%)
NHL <967..1142 CDD:302697 3/34 (9%)
LY 988..1030 CDD:214531 2/13 (15%)
NHL repeat 998..1037 CDD:271333 1/3 (33%)
NHL repeat 1038..1080 CDD:271333
NHL repeat 1084..1119 CDD:271333
FXa_inhibition 1185..1220 CDD:464251
NHL 1260..>1445 CDD:302697
NHL repeat 1260..1296 CDD:271320
LY 1292..1334 CDD:214531
NHL repeat 1302..1337 CDD:271320
NHL repeat 1345..1383 CDD:271320
FXa_inhibition <1499..1525 CDD:464251
LY 1600..1640 CDD:214531
LY 1643..1686 CDD:214531
LY 1688..1729 CDD:214531
FXa_inhibition 1801..>1825 CDD:464251
vldlrXP_002934223.1 LDLa 31..65 CDD:238060 17/36 (47%)
Ldl_recept_a 68..101 CDD:395011 17/33 (52%)
Ldl_recept_a 109..147 CDD:395011 14/37 (38%)
Ldl_recept_a 151..186 CDD:395011 19/43 (44%)
LDLa 190..222 CDD:197566 11/31 (35%)
Ldl_recept_a 236..271 CDD:395011 16/34 (47%)
LDLa 276..310 CDD:238060 13/40 (33%)
LDLa 316..348 CDD:197566 3/31 (10%)
FXa_inhibition 358..392 CDD:464251 9/35 (26%)
EGF_CA 394..424 CDD:214542 16/31 (52%)
LY 505..547 CDD:214531 16/43 (37%)
LY 548..591 CDD:214531 16/42 (38%)
LY 592..634 CDD:214531 14/41 (34%)
Ldl_recept_b 655..695 CDD:459654 10/39 (26%)
Blue background indicates that the domain is not in the aligned region.

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