Sequence 1: | NP_727914.1 | Gene: | Lrp4 / 32552 | FlyBaseID: | FBgn0030706 | Length: | 2009 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002934223.1 | Gene: | vldlr / 733485 | XenbaseID: | XB-GENE-971958 | Length: | 868 | Species: | Xenopus tropicalis |
Alignment Length: | 860 | Identity: | 282/860 - (32%) |
---|---|---|---|
Similarity: | 402/860 - (46%) | Gaps: | 128/860 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 224 CEKTGIHVMCPRTFRCISKYWLCDGDDDCGDYSDETHCGARTNCTDDQFECLNGFCIPRTWVCDG 288
Fly 289 ENDCKDFSDETH--CNRTTCTDEHFTC--NDGYCISLAFRCDGEHDCNDNSDELKCAAVINSCPE 349
Fly 350 GEFKCRGGLGGAGGPSGQCILNRFRCDGDNDCGDWSDEENCPQKPSLCTSNEYKCADGTCIPKRW 414
Fly 415 KCDKEQDCDGGEDEN--DCGSLGSEHPLT---CGSDEFTCNNGRCILKTWLCDGYPDCAAGEDEV 474
Fly 475 ECHLQ-CDLGQFLCPTKQNLTNLKICVHQKHICDGHNECPAGEDEADCPKERKCSEPSP------ 532
Fly 533 -------------------------------------CEQLCIETTAGSNECACRLGYVMDKNKV 560
Fly 561 NCTDIDECQYLTSPVCSQKCHNTMGSFKCSCETGYILRPDLRSCKALGGAMTLLVANRWDIRRVT 625
Fly 626 LSNNRYSAIVKGLHNAIALDFHHRKGLMFWSDVSTDVIKMVYMN--------GTRVRDVIKWGLE 682
Fly 683 SPGGIAVDWIHDLLFWTDSGTRRVEVSNFQGNLRTVIASYDLDKPRAIVVHPGEALAFWSDWGPN 747
Fly 748 PKIERAYMDGTQRKVIISKGVTWPNGLAIDFPNSKIYWADAKQHAIECSNLDGSDRNKILSTH-- 810
Fly 811 LPHPFALTLFEDTMYWTDWNTKTVSAADKITGKEFRAVHENFHFPMDIHAYHPARQPEYADRCQK 875
Fly 876 DRRGLRGGCSHLCLP------NKTSRRCGCPIGLSLKEDGKTC----KSTADKLVLVARRKDIRL 930
Fly 931 RHLRDNQADPNDVDMIVPLDNLKHAVALDW----------CSDTDFIYWTDVERSTINKAHLNGS 985
Fly 986 YQQRVVHSNLVSPVG 1000 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lrp4 | NP_727914.1 | LDLa | 267..301 | CDD:238060 | 19/35 (54%) |
LDLa | 306..340 | CDD:238060 | 13/35 (37%) | ||
LDLa | 347..390 | CDD:238060 | 19/42 (45%) | ||
LDLa | 397..431 | CDD:238060 | 13/35 (37%) | ||
LDLa | 442..476 | CDD:238060 | 16/33 (48%) | ||
LDLa | 480..521 | CDD:238060 | 13/40 (33%) | ||
FXa_inhibition | 576..604 | CDD:291342 | 12/27 (44%) | ||
LY | 634..671 | CDD:214531 | 10/44 (23%) | ||
NHL | <656..793 | CDD:302697 | 50/144 (35%) | ||
LY | 680..714 | CDD:214531 | 14/33 (42%) | ||
NHL repeat | 681..722 | CDD:271320 | 16/40 (40%) | ||
NHL repeat | 726..760 | CDD:271320 | 15/33 (45%) | ||
LY | 761..803 | CDD:214531 | 14/41 (34%) | ||
NHL repeat | 769..793 | CDD:271320 | 11/23 (48%) | ||
FXa_inhibition | 882..912 | CDD:291342 | 14/35 (40%) | ||
LY | 946..985 | CDD:214531 | 3/48 (6%) | ||
NHL | <967..1142 | CDD:302697 | 3/34 (9%) | ||
LY | 988..1030 | CDD:214531 | 2/13 (15%) | ||
NHL repeat | 998..1037 | CDD:271320 | 1/3 (33%) | ||
NHL repeat | 1038..1080 | CDD:271320 | |||
NHL repeat | 1084..1119 | CDD:271320 | |||
FXa_inhibition | 1185..1220 | CDD:291342 | |||
NHL | 1260..>1445 | CDD:302697 | |||
NHL repeat | 1260..1296 | CDD:271320 | |||
NHL repeat | 1302..1337 | CDD:271320 | |||
NHL repeat | 1345..1383 | CDD:271320 | |||
FXa_inhibition | <1499..1525 | CDD:291342 | |||
LY | 1600..1640 | CDD:214531 | |||
LY | 1643..1686 | CDD:214531 | |||
LY | 1688..1729 | CDD:214531 | |||
FXa_inhibition | 1801..>1825 | CDD:291342 | |||
vldlr | XP_002934223.1 | LDLa | 31..65 | CDD:238060 | 17/36 (47%) |
Ldl_recept_a | 68..101 | CDD:365841 | 17/33 (52%) | ||
Ldl_recept_a | 109..147 | CDD:365841 | 14/37 (38%) | ||
Ldl_recept_a | 151..186 | CDD:365841 | 19/43 (44%) | ||
LDLa | 190..222 | CDD:197566 | 11/31 (35%) | ||
Ldl_recept_a | 236..271 | CDD:365841 | 16/34 (47%) | ||
Ldl_recept_a | 274..310 | CDD:365841 | 13/42 (31%) | ||
LDLa | 316..348 | CDD:197566 | 3/31 (10%) | ||
FXa_inhibition | 358..392 | CDD:373209 | 9/35 (26%) | ||
EGF_CA | 394..424 | CDD:214542 | 16/31 (52%) | ||
LY | 505..547 | CDD:214531 | 16/43 (37%) | ||
LY | 548..591 | CDD:214531 | 16/42 (38%) | ||
LY | 592..634 | CDD:214531 | 14/41 (34%) | ||
Ldl_recept_b | 655..694 | CDD:393440 | 10/38 (26%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |