DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrp4 and ldlrad3

DIOPT Version :10

Sequence 1:NP_727914.1 Gene:Lrp4 / 32552 FlyBaseID:FBgn0030706 Length:2009 Species:Drosophila melanogaster
Sequence 2:NP_001124079.1 Gene:ldlrad3 / 570705 ZFINID:ZDB-GENE-030131-1533 Length:314 Species:Danio rerio


Alignment Length:158 Identity:55/158 - (34%)
Similarity:78/158 - (49%) Gaps:17/158 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   288 GENDCK---DFSDETHCNRTTCTDEHFTCNDGYCISLAFRCDGEHDCNDNSDELKCAAVINSCPE 349
            |..||:   ..:...||:    ....|.|.||.|:..|.:|||..||.|.|||..|..:.:.|..
Zfish    11 GSVDCQVSPGGNSSWHCS----APGSFMCADGECVPAAGQCDGYPDCADRSDERGCLKLKSKCAS 71

  Fly   350 GEFKCRGGLGGAGGPSGQCILNRFRCDGDNDCGDWSDEENCPQKPSLCTSNEYKCADGTCIPKRW 414
            ..|.|..|:        .||:.||:|:|..||.|.|||:||...|.||:|..:.||:|.|:.:.:
Zfish    72 TFFSCANGV--------HCIIGRFQCNGFRDCPDGSDEDNCTAHPLLCSSLRFHCANGRCVDRSF 128

  Fly   415 KCDKEQDCDGGEDENDCGSLGS--EHPL 440
            .|:.:.:|....||.:|.:...  ||.|
Zfish   129 LCNGQDNCQDNSDEENCLTTAESPEHML 156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lrp4NP_727914.1 LDLa 267..301 CDD:238060 3/15 (20%)
LDLa 306..340 CDD:238060 15/33 (45%)
LDLa 347..390 CDD:238060 16/42 (38%)
LDLa 397..431 CDD:238060 10/33 (30%)
LDLa 442..476 CDD:238060
LDLa 480..521 CDD:238060
FXa_inhibition 576..604 CDD:464251
LY 634..671 CDD:214531
LY 680..714 CDD:214531
LY 718..760 CDD:214531
Ldl_recept_b 740..777 CDD:459654
LY 761..803 CDD:214531
LY 806..838 CDD:214531
FXa_inhibition 882..912 CDD:464251
LY 946..985 CDD:214531
NHL <967..1142 CDD:302697
LY 988..1030 CDD:214531
NHL repeat 998..1037 CDD:271333
NHL repeat 1038..1080 CDD:271333
NHL repeat 1084..1119 CDD:271333
FXa_inhibition 1185..1220 CDD:464251
NHL 1260..>1445 CDD:302697
NHL repeat 1260..1296 CDD:271320
LY 1292..1334 CDD:214531
NHL repeat 1302..1337 CDD:271320
NHL repeat 1345..1383 CDD:271320
FXa_inhibition <1499..1525 CDD:464251
LY 1600..1640 CDD:214531
LY 1643..1686 CDD:214531
LY 1688..1729 CDD:214531
FXa_inhibition 1801..>1825 CDD:464251
ldlrad3NP_001124079.1 LDLa 30..62 CDD:238060 15/31 (48%)
LDLa 69..104 CDD:238060 16/42 (38%)
LDLa 111..145 CDD:238060 10/33 (30%)
Blue background indicates that the domain is not in the aligned region.

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