DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrp4 and ImpE1

DIOPT Version :10

Sequence 1:NP_727914.1 Gene:Lrp4 / 32552 FlyBaseID:FBgn0030706 Length:2009 Species:Drosophila melanogaster
Sequence 2:NP_524849.2 Gene:ImpE1 / 45879 FlyBaseID:FBgn0001253 Length:1616 Species:Drosophila melanogaster


Alignment Length:502 Identity:129/502 - (25%)
Similarity:181/502 - (36%) Gaps:123/502 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 RWDWNKHKQLHSDARIGHLEAGNESREDQLSEELS--KFGEKLFPVSNYPPYQQNNEDSQEV--- 105
            ::|..:|:|...:.:....|...|...:.|.||.:  ||.|.       .|.:.|....:|:   
  Fly  1171 QYDEEEHQQDQEEHQQDEDEPLKEVETESLPEEATTEKFQEP-------EPEEVNTPLPEELPFD 1228

  Fly   106 --HHSGEGRLHTMESS---VPSKTRISG----GTN--SNDTPKFRNIGAQRGRTEIAGIRETDRI 159
              .||...|.:.::|.   :.|.|.|.|    ..|  ..:.|....|..:......|.|.|   |
  Fly  1229 LTDHSDVNRFNELQSESLILESTTNIDGLQELDNNHIEEEEPAAHAIPHEEATPNPADIVE---I 1290

  Fly   160 SSRGRDGFIGGPSNKQKPFRVNL------------AVLVQDDPSQ--------PGETYSNCQNSN 204
            :::...|...         ||.|            .::..|:|:.        |..:.:..:...
  Fly  1291 TTQTMLGLAS---------RVTLMEPAAPVVTTLMPLMTADEPTPEPVSPAAIPSASLAAIKPGT 1346

  Fly   205 ESDENCNPEEDAVP-----NLQRDCEKTGIHVMCPRTFRCISKYWLCDGDDDCGDYSDETHCGA- 263
            |..:..:...:||.     :..|.|:....|.:|.|...|           ||....:.:.|.| 
  Fly  1347 ELRKRVDLGLEAVSLGLACSSDRQCQLADPHTVCNRRGVC-----------DCAAGEEGSQCSAE 1400

  Fly   264 RTNCTDDQFEC-LNGFCIPRTWVCDGENDCKDFSDE--THCNR--TTCTDEHFTC-NDGYCISLA 322
            ||.|:...|:| .:|.||...:||||..||.|.|||  ||..|  .||..|.|.| ..|.|||.|
  Fly  1401 RTGCSPGTFQCRSSGVCISWFFVCDGRADCNDASDEECTHNARLNQTCPTESFRCQRSGRCISRA 1465

  Fly   323 FRCDGEHDCNDNSDELKCAAVI---NSCPEGEFKCRGGLGGAGGPSGQCILNRFRCDGDNDCGDW 384
            ..|||...|....|||.|...:   |:|||..|:|         .||:|:.....|:....|.|.
  Fly  1466 ALCDGRRQCPHGEDELGCDGSVKGGNACPEHTFRC---------GSGECLPEYEYCNAIVSCKDG 1521

  Fly   385 SDEENCPQKPSLCTSNEYKCADGTCIPKRWKCDKEQD--CDGGEDENDCGSLGSEHPLTCGSDEF 447
            |||     .|.||.|.        .:|..:....|..  ..||..|.|.         .|   ..
  Fly  1522 SDE-----PPHLCGSR--------ALPNLFMRLIEAGGLLGGGRREADA---------YC---PH 1561

  Fly   448 TCNNGRCILKTWLCDGYPDCAAGEDEVECHL-QCDLGQFLCPTKQNL 493
            .|:||.|.....:|.|...|..|.||..|.: :|.     .||..:|
  Fly  1562 RCSNGLCRSTAIVCSGRDGCGDGTDEQTCSVCRCP-----APTAASL 1603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lrp4NP_727914.1 LDLa 267..301 CDD:238060 17/36 (47%)
LDLa 306..340 CDD:238060 16/34 (47%)
LDLa 347..390 CDD:238060 14/42 (33%)
LDLa 397..431 CDD:238060 7/35 (20%)
LDLa 442..476 CDD:238060 11/33 (33%)
LDLa 480..521 CDD:238060 4/14 (29%)
FXa_inhibition 576..604 CDD:464251
LY 634..671 CDD:214531
LY 680..714 CDD:214531
LY 718..760 CDD:214531
Ldl_recept_b 740..777 CDD:459654
LY 761..803 CDD:214531
LY 806..838 CDD:214531
FXa_inhibition 882..912 CDD:464251
LY 946..985 CDD:214531
NHL <967..1142 CDD:302697
LY 988..1030 CDD:214531
NHL repeat 998..1037 CDD:271333
NHL repeat 1038..1080 CDD:271333
NHL repeat 1084..1119 CDD:271333
FXa_inhibition 1185..1220 CDD:464251
NHL 1260..>1445 CDD:302697
NHL repeat 1260..1296 CDD:271320
LY 1292..1334 CDD:214531
NHL repeat 1302..1337 CDD:271320
NHL repeat 1345..1383 CDD:271320
FXa_inhibition <1499..1525 CDD:464251
LY 1600..1640 CDD:214531
LY 1643..1686 CDD:214531
LY 1688..1729 CDD:214531
FXa_inhibition 1801..>1825 CDD:464251
ImpE1NP_524849.2 EB 75..131 CDD:460294
rne <795..981 CDD:236766
LDLa 1404..1437 CDD:238060 15/32 (47%)
LDLa 1448..1483 CDD:238060 16/34 (47%)
LDLa 1493..1524 CDD:238060 12/39 (31%)
Blue background indicates that the domain is not in the aligned region.

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