DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lrp4 and dgcr2

DIOPT Version :9

Sequence 1:NP_727914.1 Gene:Lrp4 / 32552 FlyBaseID:FBgn0030706 Length:2009 Species:Drosophila melanogaster
Sequence 2:NP_001002656.1 Gene:dgcr2 / 436929 ZFINID:ZDB-GENE-040718-404 Length:536 Species:Danio rerio


Alignment Length:439 Identity:84/439 - (19%)
Similarity:131/439 - (29%) Gaps:150/439 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   267 CTDDQFECLNG--FCIPRTWVCDGENDCKDFSDETHCNRTTCTDEHFTCNDG-----------YC 318
            |...||.|.:|  .|||.||.|||...|:|.|||..|  .|..:|.:..::|           ..
Zfish    40 CNPGQFACRSGKLQCIPSTWQCDGWTACEDKSDEIDC--PTIKEERYRYSNGLEPVEDVMGVAQP 102

  Fly   319 ISLAFRC-DGEHDCNDNSDELKCAAV----------INSCPEGEFKCRGGLGGAGGPSGQCILNR 372
            :....:| .|.|.....:   .|..|          :.:|.    |..|.|...|.......:.:
Zfish   103 VRFNKKCPSGWHHYEKTA---SCYKVYLRSENYWQAVETCQ----KVNGSLATFGTNEELQFILK 160

  Fly   373 FRCDGDNDCGDWSDEENCPQKPSLC---------TSNEYKCADGTCIPKRWKCDKEQDCDGGEDE 428
            ...|.|         ||..::...|         .:|:....:|     ||:...:.........
Zfish   161 IEVDFD---------ENVCERKDQCKFWVGYQYVITNQNHTLEG-----RWEVAYKGSMQVFLPP 211

  Fly   429 NDCGSLGSEHPLTCGSDEFTCNNGRCI--------------LKTWLCDGYPDCAAGEDEVECHLQ 479
            ....:||..:|        |.:|..|.              |.:|..:            .|:.:
Zfish   212 EGLEALGEANP--------TQDNVFCAQLQRFQIKSMNEHGLHSWHAE------------NCYKK 256

  Fly   480 CDLGQFLCPTKQNLTNLKICVHQKHICDGHNECPAGEDEA-DCPKERKCSEPSP-------CE-- 534
            .   .|||..:|...::|..|    :.:|:...|.|:|.. .|    .|.:..|       ||  
Zfish   257 F---PFLCKRRQTCVDIKDNV----VNEGYYFTPKGDDPCLSC----TCHDGEPEMCVAALCERP 310

  Fly   535 QLCIETTAGSNECACRLGYVMDKNKVNCTDIDECQYLTSPVCSQKCHNTMGSFKCSCETGYILRP 599
            |.|........||.          |..|.|.|......|.....:       ...||.:.:::. 
Zfish   311 QGCQHFRKDPKECC----------KFTCLDPDGSSLFDSMASGMR-------LIVSCISSFLIL- 357

  Fly   600 DLRSCKALGGAMTLLVANRWDIRRVTLSNNRYSAIVKGLHNAIALDFHH 648
                      ::.|.:.:|...||    ..|...::.|       :.||
Zfish   358 ----------SLLLFMVHRLRQRR----RERIETLIGG-------NLHH 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lrp4NP_727914.1 LDLa 267..301 CDD:238060 18/35 (51%)
LDLa 306..340 CDD:238060 5/45 (11%)
LDLa 347..390 CDD:238060 8/42 (19%)
LDLa 397..431 CDD:238060 5/42 (12%)
LDLa 442..476 CDD:238060 5/47 (11%)
LDLa 480..521 CDD:238060 10/41 (24%)
FXa_inhibition 576..604 CDD:291342 2/27 (7%)
LY 634..671 CDD:214531 3/15 (20%)
NHL <656..793 CDD:302697
LY 680..714 CDD:214531
NHL repeat 681..722 CDD:271320
NHL repeat 726..760 CDD:271320
LY 761..803 CDD:214531
NHL repeat 769..793 CDD:271320
FXa_inhibition 882..912 CDD:291342
LY 946..985 CDD:214531
NHL <967..1142 CDD:302697
LY 988..1030 CDD:214531
NHL repeat 998..1037 CDD:271320
NHL repeat 1038..1080 CDD:271320
NHL repeat 1084..1119 CDD:271320
FXa_inhibition 1185..1220 CDD:291342
NHL 1260..>1445 CDD:302697
NHL repeat 1260..1296 CDD:271320
NHL repeat 1302..1337 CDD:271320
NHL repeat 1345..1383 CDD:271320
FXa_inhibition <1499..1525 CDD:291342
LY 1600..1640 CDD:214531
LY 1643..1686 CDD:214531
LY 1688..1729 CDD:214531
FXa_inhibition 1801..>1825 CDD:291342
dgcr2NP_001002656.1 LDLa 40..76 CDD:238060 18/35 (51%)
CLECT_DGCR2_like 109..263 CDD:153069 31/197 (16%)
VWC 267..325 CDD:214564 15/75 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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