DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lrp4 and Ndg

DIOPT Version :9

Sequence 1:NP_727914.1 Gene:Lrp4 / 32552 FlyBaseID:FBgn0030706 Length:2009 Species:Drosophila melanogaster
Sequence 2:NP_610575.1 Gene:Ndg / 36089 FlyBaseID:FBgn0026403 Length:1350 Species:Drosophila melanogaster


Alignment Length:1020 Identity:253/1020 - (24%)
Similarity:369/1020 - (36%) Gaps:290/1020 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 DQLSEELSKFGEKLFP------VSNYPPYQQNNEDSQEVHHSGEGRLHTMESSVPSKTRISGGTN 131
            ||||.::..:||  .|      |...|.|.:.               :|.|.  |.:.:.....|
  Fly   433 DQLSVKIEIYGE--VPAVAADAVLILPDYVEE---------------YTFER--PGELKSVQVLN 478

  Fly   132 SNDTPKFRNIGAQRGRTEIAGIRETDRISSRG--RDGFIGGPSNK--QKPFRVNLAVLVQDDP-- 190
            .|.|.:.|          :.|::...||..|.  ||......:.|  ||..:|.|..:.:|..  
  Fly   479 INITEEQR----------VLGLQVEQRILYRSCLRDDEADPSATKVLQKISKVALDYVERDQALR 533

  Fly   191 ----SQPGET-YSNCQNSNESD--EN--CNPEEDAVPNLQRDC--------EKTGIHVMCPRTFR 238
                |:.|.| .||..|...:|  ||  |.|.||   ..:.||        ::.|:.| |.....
  Fly   534 IGAMSKVGVTPESNACNDGTADCVENSVCVPYED---TYRCDCYHGFAAQLDERGVEV-CLDIDE 594

  Fly   239 CISKYWLCDGDDDCGDYSDETHCGARTNCT----------------------------------- 268
            |.:...:||.:..|    |.|..|....||                                   
  Fly   595 CATGSHVCDENAVC----DNTEGGFNCYCTEGFEGNGYRCLSNSTADNIEYPPAVEGQAEPTSEP 655

  Fly   269 -------------------DDQFECLNGFCIPRTWVCDGENDCKDFSDETHCNRTTCTDEHFTCN 314
                               |||:...|.:..|...:....::|...|.:..|.:..|     ||:
  Fly   656 SPNPSPYPDQGQDQEREREDDQYPQPNPYPYPEEQIPQHPDECYRCSKDADCYQGRC-----TCH 715

  Fly   315 DGYCISLAFRCDGEHDCNDNSDELKCAAVINSCPEGEFKCRGGLGGAGGPSGQC---ILNRF--- 373
            :|:        ||        |...|.   |.|..||.          ..:|:|   :|.|.   
  Fly   716 EGF--------DG--------DGYTCT---NICGHGEV----------WENGRCEPLLLERHDVD 751

  Fly   374 -RCDGDNDCGDWSDEENCPQKPSLCTSNEYKCA-----DG----TCIPKRWKCDKEQDCDGGEDE 428
             .||...:|       .||....| :.:..:|.     ||    ..||    ||.:::|   ...
  Fly   752 PLCDALGEC-------RCPYGYEL-SEDSQRCTYVQEFDGERNADLIP----CDVDENC---HIN 801

  Fly   429 NDCGSLGSE--HPLTC----GSDEFTC---NNGRCILKTWLCDGYPDCAAGEDEVECHLQCDLGQ 484
            ..|...|.|  |..||    ..|.:.|   ::..|.::..:||.:.||...|...:...||..|.
  Fly   802 ATCNWYGQELRHICTCQPGFRGDGYNCDPISDDSCAIRPDICDVHADCVYEEHLGKSECQCQAGY 866

  Fly   485 ----FLCPTKQNLTNLKICVHQKHICDGHNEC-------------PAGE--------------DE 518
                |.|.......:.:.|.......||...|             |||.              |.
  Fly   867 TGNGFNCQLAAECQSAEHCGENAFCDDGVCRCQADFERDVSDRCVPAGRCGSVFCGSNAICKWDS 931

  Fly   519 ADCPKERKC-------------SEPSPCEQL--------CIETTAGSN-ECACRLGYVMDKNKVN 561
            |:..:...|             |:|..|..|        |..|...:| ||.|..|:..|    .
  Fly   932 AEGVQYCDCLDGYQGDALTGCTSKPLSCHVLNNCGIHATCEPTEDPANYECQCIAGFKGD----G 992

  Fly   562 CTDIDECQYLTSP-VC--SQKCHNTMGSFKCSCETGYILRPDLRSCKALGGAMTLLVANRWDIRR 623
            ...|:|...|.:| :|  :.:|.:|.....|.|..|:.....|...:....:..|:|:....|.|
  Fly   993 YVCIEEQNCLNNPTLCDMNAQCRSTNSGLVCVCNQGFFGNGSLCQERQHQDSDFLIVSQGVMIAR 1057

  Fly   624 VTLSNNRYSAIVKGLHNAIALDFHHRKGLMFWSDVSTDVIKMVYMNGTRVRDVIKWGLESPGGIA 688
            |.| |.|....:.....||.||....:|.::|.|:||..|.....:||.:|..|...:|||.|||
  Fly  1058 VPL-NGRNVRPISVAQMAIGLDKDCVEGRVYWGDISTKKIVSTKYDGTDLRPFITTDIESPEGIA 1121

  Fly   689 VDWIHDLLFWTDSGTRRVEVSNFQG-NLRTVIASYDLDKPRAIVVHPGEALAFWSDWG-PNPKIE 751
            :|.|...|:|.||....:||::... :||.||.:..|..||.|.|.|.....|||||. .:||||
  Fly  1122 IDVISRRLYWADSAKDTIEVASLDDPSLRAVIINKQLVNPRGIAVDPYREKLFWSDWDRESPKIE 1186

  Fly   752 RAYMDGTQRKVIISK-GVTWPNGLAIDFPNSKIYWADAKQHAIECSNLDGSDRN-KILSTHLPHP 814
            .:.:|||.|::::.| .||.||.|.:...:.::.:|||....:||  ::..:|. :.:|..|.:|
  Fly  1187 MSNLDGTGRELLLGKDDVTLPNSLVVLENSGEVCYADAGTKKVEC--IEPQNRQIRTISNELSYP 1249

  Fly   815 FALTLFEDTMYWTDWNTKTVSAADKITGKE------FRAVHENFHFPMDIHAYHPARQPEYADRC 873
            |.:|...|..|||||.||.|...|.:..::      |...|:  .:.|.:...|   .|:|...|
  Fly  1250 FGITFTHDQFYWTDWTTKKVEIVDSLGARQTPIQPPFFGSHK--MYGMTVVEQH---CPQYQSPC 1309

  Fly   874 QKDRRGLRGGC--SHLCLPNKTSRRCGCPIGLSLKEDGKTCKSTA 916
            |..    .|||  |.|||.|:.:            ..||:||.|:
  Fly  1310 QIS----NGGCTDSRLCLVNRQA------------PSGKSCKCTS 1338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lrp4NP_727914.1 LDLa 267..301 CDD:238060 9/87 (10%)
LDLa 306..340 CDD:238060 7/33 (21%)
LDLa 347..390 CDD:238060 10/49 (20%)
LDLa 397..431 CDD:238060 8/42 (19%)
LDLa 442..476 CDD:238060 9/40 (23%)
LDLa 480..521 CDD:238060 13/71 (18%)
FXa_inhibition 576..604 CDD:291342 7/29 (24%)
LY 634..671 CDD:214531 10/36 (28%)
NHL <656..793 CDD:302697 54/139 (39%)
LY 680..714 CDD:214531 14/34 (41%)
NHL repeat 681..722 CDD:271320 18/41 (44%)
NHL repeat 726..760 CDD:271320 17/34 (50%)
LY 761..803 CDD:214531 11/42 (26%)
NHL repeat 769..793 CDD:271320 7/23 (30%)
FXa_inhibition 882..912 CDD:291342 10/31 (32%)
LY 946..985 CDD:214531
NHL <967..1142 CDD:302697
LY 988..1030 CDD:214531
NHL repeat 998..1037 CDD:271320
NHL repeat 1038..1080 CDD:271320
NHL repeat 1084..1119 CDD:271320
FXa_inhibition 1185..1220 CDD:291342
NHL 1260..>1445 CDD:302697
NHL repeat 1260..1296 CDD:271320
NHL repeat 1302..1337 CDD:271320
NHL repeat 1345..1383 CDD:271320
FXa_inhibition <1499..1525 CDD:291342
LY 1600..1640 CDD:214531
LY 1643..1686 CDD:214531
LY 1688..1729 CDD:214531
FXa_inhibition 1801..>1825 CDD:291342
NdgNP_610575.1 NIDO 108..262 CDD:214712
EGF_3 285..320 CDD:372403
G2F 322..549 CDD:214774 34/144 (24%)
EGF_CA 591..627 CDD:311536 9/39 (23%)
EGF_3 797..828 CDD:372403 8/33 (24%)
EGF_3 836..873 CDD:372403 10/36 (28%)
EGF_3 963..995 CDD:372403 8/35 (23%)
EGF_3 1001..1036 CDD:372403 8/34 (24%)
NHL 1059..>1275 CDD:302697 81/218 (37%)
NHL repeat 1067..1103 CDD:271320 10/35 (29%)
Ldl_recept_b 1084..1123 CDD:393440 16/38 (42%)
LY 1107..1145 CDD:214531 16/37 (43%)
NHL repeat 1117..1154 CDD:271320 15/36 (42%)
LY 1152..1195 CDD:214531 20/42 (48%)
NHL repeat 1161..1198 CDD:271320 18/36 (50%)
NHL repeat 1204..1245 CDD:271320 12/42 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45461707
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.