Sequence 1: | NP_727914.1 | Gene: | Lrp4 / 32552 | FlyBaseID: | FBgn0030706 | Length: | 2009 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_786938.2 | Gene: | Ldlr / 300438 | RGDID: | 2998 | Length: | 879 | Species: | Rattus norvegicus |
Alignment Length: | 762 | Identity: | 261/762 - (34%) |
---|---|---|---|
Similarity: | 381/762 - (50%) | Gaps: | 87/762 - (11%) |
- Green bases have known domain annotations that are detailed below.
Fly 235 RTFRCISKYWLCDGDDDCGDYSDET--HCGARTNCTDDQFECLN--GFCIPRTWVCDGENDCKDF 295
Fly 296 SDETHCNRTTCTDEHFTCNDGYCISLAFRCDGEHDCNDNSDELKCAAVINSCPEGEFKCRGGLGG 360
Fly 361 AGGPSGQCILNRFRCDGDNDCGDWSDE--ENCPQK-------PSLCTSNEYKCADGTCIPKRWKC 416
Fly 417 DKEQDCDGGEDENDCGSLGSEHPLTCGSDEFTCNNGRCILKTWLCDGYPDCAAGEDEVEC--HLQ 479
Fly 480 CD-LGQFLCPTKQNLTNLKICVHQKHICDGHNECPAGEDE--ADCPKERKCSEPS-PCEQLCIET 540
Fly 541 TAGSNECACRLGY-VMDKNKVNCTDIDECQYLTSPVCSQKCHNTMGSFKCSCETGYILRPDLRSC 604
Fly 605 KALGGAMTLLVANRWDIRRVTLSNNRYSAIVKGLHNAIALDFHHRKGLMFWSDVSTDVIKMVYMN 669
Fly 670 -GTRVR--DVIKWGLESPGGIAVDWIHDLLFWTDSGTRRVEVSNFQGNLRTVIASYDLDKPRAIV 731
Fly 732 VHPGEALAFWSDWGPNPKIERAYMDGTQRKVIISKGVTWPNGLAIDFPNSKIYWADAKQHAIECS 796
Fly 797 NLDGSDRNKIL--STHLPHPFALTLFEDTMYWTDWNTKTVSAADKITGKEFRAVHENFHFPMDIH 859
Fly 860 AYHPARQPEYADRCQKDRRGLRGGCSHLCLP------NKTSRRCGCPIGLSLKEDGKTCKSTADK 918
Fly 919 L------------------VLVARRKD-IRLRHLRDNQA-----DPN 941 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lrp4 | NP_727914.1 | LDLa | 267..301 | CDD:238060 | 15/35 (43%) |
LDLa | 306..340 | CDD:238060 | 17/33 (52%) | ||
LDLa | 347..390 | CDD:238060 | 16/44 (36%) | ||
LDLa | 397..431 | CDD:238060 | 13/33 (39%) | ||
LDLa | 442..476 | CDD:238060 | 14/33 (42%) | ||
LDLa | 480..521 | CDD:238060 | 9/43 (21%) | ||
FXa_inhibition | 576..604 | CDD:291342 | 14/27 (52%) | ||
LY | 634..671 | CDD:214531 | 11/37 (30%) | ||
NHL | <656..793 | CDD:302697 | 50/139 (36%) | ||
LY | 680..714 | CDD:214531 | 15/33 (45%) | ||
NHL repeat | 681..722 | CDD:271320 | 17/40 (43%) | ||
NHL repeat | 726..760 | CDD:271320 | 14/33 (42%) | ||
LY | 761..803 | CDD:214531 | 13/41 (32%) | ||
NHL repeat | 769..793 | CDD:271320 | 11/23 (48%) | ||
FXa_inhibition | 882..912 | CDD:291342 | 12/35 (34%) | ||
LY | 946..985 | CDD:214531 | |||
NHL | <967..1142 | CDD:302697 | |||
LY | 988..1030 | CDD:214531 | |||
NHL repeat | 998..1037 | CDD:271320 | |||
NHL repeat | 1038..1080 | CDD:271320 | |||
NHL repeat | 1084..1119 | CDD:271320 | |||
FXa_inhibition | 1185..1220 | CDD:291342 | |||
NHL | 1260..>1445 | CDD:302697 | |||
NHL repeat | 1260..1296 | CDD:271320 | |||
NHL repeat | 1302..1337 | CDD:271320 | |||
NHL repeat | 1345..1383 | CDD:271320 | |||
FXa_inhibition | <1499..1525 | CDD:291342 | |||
LY | 1600..1640 | CDD:214531 | |||
LY | 1643..1686 | CDD:214531 | |||
LY | 1688..1729 | CDD:214531 | |||
FXa_inhibition | 1801..>1825 | CDD:291342 | |||
Ldlr | NP_786938.2 | Ldl_recept_a | 25..58 | CDD:395011 | 10/22 (45%) |
Ldl_recept_a | 66..104 | CDD:395011 | 16/38 (42%) | ||
Ldl_recept_a | 107..143 | CDD:395011 | 18/35 (51%) | ||
Ldl_recept_a | 196..232 | CDD:395011 | 14/35 (40%) | ||
Ldl_recept_a | 235..271 | CDD:395011 | 15/35 (43%) | ||
Ldl_recept_a | 279..309 | CDD:395011 | 5/36 (14%) | ||
FXa_inhibition | 319..353 | CDD:405372 | 9/36 (25%) | ||
EGF_CA | 355..389 | CDD:214542 | 18/35 (51%) | ||
LDL-receptor class B 1 | 398..439 | 13/40 (33%) | |||
NHL | <435..628 | CDD:302697 | 67/192 (35%) | ||
NHL repeat | 435..469 | CDD:271320 | 8/33 (24%) | ||
LDL-receptor class B 2 | 440..485 | 16/44 (36%) | |||
NHL repeat | 476..514 | CDD:271320 | 16/37 (43%) | ||
LDL-receptor class B 3 | 486..528 | 15/41 (37%) | |||
LDL-receptor class B 4 | 529..572 | 12/42 (29%) | |||
Ldl_recept_b | 529..569 | CDD:395012 | 11/39 (28%) | ||
NHL repeat | 555..600 | CDD:271320 | 15/44 (34%) | ||
LDL-receptor class B 5 | 573..615 | 15/41 (37%) | |||
NHL repeat | 606..628 | CDD:271320 | 10/21 (48%) | ||
LDL-receptor class B 6 | 616..658 | 14/41 (34%) | |||
Ldl_recept_b | 616..655 | CDD:395012 | 13/38 (34%) | ||
FXa_inhibition | 674..711 | CDD:405372 | 12/36 (33%) | ||
Clustered O-linked oligosaccharides | 717..788 | 9/48 (19%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 718..797 | 9/47 (19%) | |||
Required for MYLIP-triggered down-regulation of LDLR. /evidence=ECO:0000250|UniProtKB:P01130 | 830..879 | ||||
NPXY motif. /evidence=ECO:0000250|UniProtKB:P01130 | 842..847 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG1215 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |