Sequence 1: | NP_727914.1 | Gene: | Lrp4 / 32552 | FlyBaseID: | FBgn0030706 | Length: | 2009 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_037287.2 | Gene: | Vldlr / 25696 | RGDID: | 3963 | Length: | 873 | Species: | Rattus norvegicus |
Alignment Length: | 920 | Identity: | 284/920 - (30%) |
---|---|---|---|
Similarity: | 415/920 - (45%) | Gaps: | 193/920 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 238 RCISKYWLCDGDDDCGDYSDETHCGARTNCTDDQFECLNGFCIPRTWVCDGENDCKDFSDET--H 300
Fly 301 CNRTTCTDEHFTC--NDGYCISLAFRCDGEHDCNDNSDELKCAAVINSCPEGEFKCRGGLGGAGG 363
Fly 364 PSGQCILNRFRCDGDNDCGDWSDEENCPQKPSLCTSNEYKCADGTCIPKRWKCDKEQDCDGGEDE 428
Fly 429 N--DCGSLGSEHPLTCGSDEFTCNNGRCILKTWLCDGYPDCAAGEDEVECHLQ-CDLGQFLCPTK 490
Fly 491 QNLTNLKICVHQKHICDGHNECPAGEDEADCPKERKCSEPSP----------------------- 532
Fly 533 --------------------CEQLCIETTAGSNECACRLGYVMDKNKVNCTDIDECQYLTSP-VC 576
Fly 577 SQKCHNTMGSFKCSCETGYILRPDLRS--CKALGGAMTLLVANRWDIRRVTLSNNRYSAIVKGLH 639
Fly 640 NAIALDFHHRKGLMFWSDVSTDVI-------------KMVYMNGTRVRDVIKWGLESPGGIAVDW 691
Fly 692 IHDLLFWTDSGTRRVEVSNFQGNLRTVIASYDLDKPRAIVVHPGEALAFWSDWGPNPKIERAYMD 756
Fly 757 GTQRKVIISKGVTWPNGLAIDFPNSKIYWADAKQHAIECSNLDGSDRNKILST--HLPHPFALTL 819
Fly 820 FEDTMYWTDWNTKTVSAADKITGKEFRAVHENFHFPMDIHAYHPARQPEYADRCQKDRRGLRGGC 884
Fly 885 SHLCLP----NKTSRR--CGCPIGLSLKEDGKTCKSTADKLVLVARRKDIRLRH-LRDNQADPND 942
Fly 943 VDMIVPLDNLKHAVALDWCSDTDFIYWTDVERSTINKAHLNGSYQQRVVHSNLVSPVGLALDWIT 1007
Fly 1008 DKLYWTDPSTNRIEVATTNGKMRTLLIWEKLYKPRDIVVNPIEGFMFWSDWGDDPMIERANMDGH 1072
Fly 1073 ERVTITSKKL 1082 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lrp4 | NP_727914.1 | LDLa | 267..301 | CDD:238060 | 17/35 (49%) |
LDLa | 306..340 | CDD:238060 | 13/35 (37%) | ||
LDLa | 347..390 | CDD:238060 | 16/42 (38%) | ||
LDLa | 397..431 | CDD:238060 | 13/35 (37%) | ||
LDLa | 442..476 | CDD:238060 | 18/33 (55%) | ||
LDLa | 480..521 | CDD:238060 | 12/40 (30%) | ||
FXa_inhibition | 576..604 | CDD:291342 | 13/29 (45%) | ||
LY | 634..671 | CDD:214531 | 13/49 (27%) | ||
NHL | <656..793 | CDD:302697 | 46/149 (31%) | ||
LY | 680..714 | CDD:214531 | 10/33 (30%) | ||
NHL repeat | 681..722 | CDD:271320 | 12/40 (30%) | ||
NHL repeat | 726..760 | CDD:271320 | 15/33 (45%) | ||
LY | 761..803 | CDD:214531 | 13/41 (32%) | ||
NHL repeat | 769..793 | CDD:271320 | 11/23 (48%) | ||
FXa_inhibition | 882..912 | CDD:291342 | 16/35 (46%) | ||
LY | 946..985 | CDD:214531 | 0/38 (0%) | ||
NHL | <967..1142 | CDD:302697 | 15/116 (13%) | ||
LY | 988..1030 | CDD:214531 | 4/41 (10%) | ||
NHL repeat | 998..1037 | CDD:271320 | 5/38 (13%) | ||
NHL repeat | 1038..1080 | CDD:271320 | 8/41 (20%) | ||
NHL repeat | 1084..1119 | CDD:271320 | |||
FXa_inhibition | 1185..1220 | CDD:291342 | |||
NHL | 1260..>1445 | CDD:302697 | |||
NHL repeat | 1260..1296 | CDD:271320 | |||
NHL repeat | 1302..1337 | CDD:271320 | |||
NHL repeat | 1345..1383 | CDD:271320 | |||
FXa_inhibition | <1499..1525 | CDD:291342 | |||
LY | 1600..1640 | CDD:214531 | |||
LY | 1643..1686 | CDD:214531 | |||
LY | 1688..1729 | CDD:214531 | |||
FXa_inhibition | 1801..>1825 | CDD:291342 | |||
Vldlr | NP_037287.2 | LDLa | 33..67 | CDD:238060 | 14/22 (64%) |
LDLa | 71..103 | CDD:197566 | 16/32 (50%) | ||
Ldl_recept_a | 111..149 | CDD:395011 | 14/37 (38%) | ||
Ldl_recept_a | 153..188 | CDD:395011 | 16/43 (37%) | ||
LDLa | 192..224 | CDD:197566 | 11/31 (35%) | ||
Ldl_recept_a | 237..273 | CDD:395011 | 18/35 (51%) | ||
Ldl_recept_a | 276..312 | CDD:395011 | 12/42 (29%) | ||
Ldl_recept_a | 320..350 | CDD:395011 | 1/29 (3%) | ||
FXa_inhibition | 360..394 | CDD:405372 | 8/35 (23%) | ||
EGF_CA | 396..426 | CDD:214542 | 18/34 (53%) | ||
LDL-receptor class B 1 | 439..480 | 14/40 (35%) | |||
LY | 461..499 | CDD:214531 | 12/37 (32%) | ||
LDL-receptor class B 2 | 481..524 | 13/54 (24%) | |||
Ldl_recept_b | 481..521 | CDD:395012 | 10/51 (20%) | ||
LY | 508..547 | CDD:214531 | 12/50 (24%) | ||
LDL-receptor class B 3 | 525..567 | 12/41 (29%) | |||
LDL-receptor class B 4 | 568..611 | 17/42 (40%) | |||
Ldl_recept_b | 568..608 | CDD:395012 | 16/39 (41%) | ||
LY | 592..634 | CDD:214531 | 13/41 (32%) | ||
LDL-receptor class B 5 | 612..654 | 17/41 (41%) | |||
LDL-receptor class B 6 | 655..697 | 15/41 (37%) | |||
Ldl_recept_b | 655..694 | CDD:395012 | 13/38 (34%) | ||
FXa_inhibition | 706..749 | CDD:405372 | 18/44 (41%) | ||
Clustered O-linked oligosaccharides | 751..790 | 8/39 (21%) | |||
Endocytosis signal. /evidence=ECO:0000255 | 832..837 | 1/4 (25%) | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG1215 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |