Sequence 1: | NP_727914.1 | Gene: | Lrp4 / 32552 | FlyBaseID: | FBgn0030706 | Length: | 2009 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_034830.2 | Gene: | Ldlr / 16835 | MGIID: | 96765 | Length: | 862 | Species: | Mus musculus |
Alignment Length: | 747 | Identity: | 257/747 - (34%) |
---|---|---|---|
Similarity: | 378/747 - (50%) | Gaps: | 72/747 - (9%) |
- Green bases have known domain annotations that are detailed below.
Fly 214 EDAVPNLQRDCEKTGIHVMCPRTFRCISKYWLCDGDDDCGDYSDET--HCGARTNCTDDQFECLN 276
Fly 277 --GFCIPRTWVCDGENDCKDFSDETHCNRTTCTDEHFTCNDGYCISLAFRCDGEHDCNDNSDELK 339
Fly 340 CAAVINSCPEGEFKCRGGLGGAGGPSGQCILNRFRCDGDNDCGDWSDE--ENCPQK-------PS 395
Fly 396 LCTSNEYKCADGTCIPKRWKCDKEQDCDGGEDENDCGSLGSEHPLTCGSDEFTCNNGRCILKTWL 460
Fly 461 CDGYPDCAAGEDEVEC--HLQCD-LGQFLCPTKQNLTNLKICVHQKHICDGHNECPAGEDE--AD 520
Fly 521 CPKERKCSEPS-PCEQLCIETTAGSNECACRLGY-VMDKNKVNCTDIDECQYLTSPVCSQKCHNT 583
Fly 584 MGSFKCSCETGYILRPDLRSCKALGGAMTLLVANRWDIRRVTLSNNRYSAIVKGLHNAIALDFHH 648
Fly 649 RKGLMFWSDVSTDVIKMVYMN---GTRVRDVIKWGLESPGGIAVDWIHDLLFWTDSGTRRVEVSN 710
Fly 711 FQGNLRTVIASYDLDKPRAIVVHPGEALAFWSDWGPNPKIERAYMDGTQRKVIISKGVTWPNGLA 775
Fly 776 IDFPNSKIYWADAKQHAIECSNLDGSDRNKIL--STHLPHPFALTLFEDTMYWTDWNTKTVSAAD 838
Fly 839 KITGKEFRAVHENFHFPMDIHAYHPARQPEYADRCQKDRRGLRGGCSHLCL------PNKTSRRC 897
Fly 898 GCPIGLSLKEDGKTCKSTADKLVLVARRKDIR 929 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Lrp4 | NP_727914.1 | LDLa | 267..301 | CDD:238060 | 16/35 (46%) |
LDLa | 306..340 | CDD:238060 | 18/33 (55%) | ||
LDLa | 347..390 | CDD:238060 | 15/44 (34%) | ||
LDLa | 397..431 | CDD:238060 | 14/33 (42%) | ||
LDLa | 442..476 | CDD:238060 | 14/33 (42%) | ||
LDLa | 480..521 | CDD:238060 | 10/43 (23%) | ||
FXa_inhibition | 576..604 | CDD:291342 | 13/27 (48%) | ||
LY | 634..671 | CDD:214531 | 11/39 (28%) | ||
NHL | <656..793 | CDD:302697 | 47/139 (34%) | ||
LY | 680..714 | CDD:214531 | 15/33 (45%) | ||
NHL repeat | 681..722 | CDD:271320 | 17/40 (43%) | ||
NHL repeat | 726..760 | CDD:271320 | 14/33 (42%) | ||
LY | 761..803 | CDD:214531 | 12/41 (29%) | ||
NHL repeat | 769..793 | CDD:271320 | 10/23 (43%) | ||
FXa_inhibition | 882..912 | CDD:291342 | 13/35 (37%) | ||
LY | 946..985 | CDD:214531 | |||
NHL | <967..1142 | CDD:302697 | |||
LY | 988..1030 | CDD:214531 | |||
NHL repeat | 998..1037 | CDD:271320 | |||
NHL repeat | 1038..1080 | CDD:271320 | |||
NHL repeat | 1084..1119 | CDD:271320 | |||
FXa_inhibition | 1185..1220 | CDD:291342 | |||
NHL | 1260..>1445 | CDD:302697 | |||
NHL repeat | 1260..1296 | CDD:271320 | |||
NHL repeat | 1302..1337 | CDD:271320 | |||
NHL repeat | 1345..1383 | CDD:271320 | |||
FXa_inhibition | <1499..1525 | CDD:291342 | |||
LY | 1600..1640 | CDD:214531 | |||
LY | 1643..1686 | CDD:214531 | |||
LY | 1688..1729 | CDD:214531 | |||
FXa_inhibition | 1801..>1825 | CDD:291342 | |||
Ldlr | NP_034830.2 | Ldl_recept_a | 25..58 | CDD:278486 | 12/42 (29%) |
Ldl_recept_a | 66..104 | CDD:278486 | 17/38 (45%) | ||
Ldl_recept_a | 107..143 | CDD:278486 | 19/35 (54%) | ||
Ldl_recept_a | 146..184 | CDD:278486 | 15/46 (33%) | ||
Ldl_recept_a | 196..232 | CDD:278486 | 15/35 (43%) | ||
Ldl_recept_a | 236..271 | CDD:278486 | 15/34 (44%) | ||
Ldl_recept_a | 279..309 | CDD:278486 | 6/36 (17%) | ||
FXa_inhibition | 319..>347 | CDD:291342 | 9/28 (32%) | ||
EGF_CA | 355..389 | CDD:214542 | 17/35 (49%) | ||
LDL-receptor class B 1 | 398..439 | 13/40 (33%) | |||
LY | 420..458 | CDD:214531 | 11/37 (30%) | ||
LDL-receptor class B 2 | 440..485 | 14/44 (32%) | |||
Ldl_recept_b | 440..482 | CDD:278487 | 11/41 (27%) | ||
LDL-receptor class B 3 | 486..528 | 15/41 (37%) | |||
Ldl_recept_b | 486..525 | CDD:278487 | 13/38 (34%) | ||
LDL-receptor class B 4 | 529..572 | 12/42 (29%) | |||
Ldl_recept_b | 529..569 | CDD:278487 | 11/39 (28%) | ||
LY | 553..595 | CDD:214531 | 12/41 (29%) | ||
LDL-receptor class B 5 | 573..615 | 15/41 (37%) | |||
LDL-receptor class B 6 | 616..658 | 15/41 (37%) | |||
Ldl_recept_b | 616..655 | CDD:278487 | 14/38 (37%) | ||
FXa_inhibition | 675..712 | CDD:291342 | 13/36 (36%) | ||
Clustered O-linked oligosaccharides | 722..770 | 1/8 (13%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 730..761 | 257/747 (34%) | |||
Required for MYLIP-triggered down-regulation of LDLR. /evidence=ECO:0000250|UniProtKB:P01130 | 813..862 | ||||
NPXY motif. /evidence=ECO:0000250|UniProtKB:P01130 | 825..830 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG1215 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |