DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycD and ccnb1

DIOPT Version :9

Sequence 1:NP_523355.2 Gene:CycD / 32551 FlyBaseID:FBgn0010315 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_571588.1 Gene:ccnb1 / 58025 ZFINID:ZDB-GENE-000406-10 Length:398 Species:Danio rerio


Alignment Length:347 Identity:77/347 - (22%)
Similarity:131/347 - (37%) Gaps:58/347 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 RLNKRQQQMSSP--AIIRDQSSICSSLGDAESDSHPDAQNNAVVCNMKELVYIYASVDSAAKNPE 81
            ||...:.|.:.|  |::.::..:.......|..::|..:.   ....||:....|:.....|.|.
Zfish    11 RLASSENQNALPGKAVVANKPGLRPRAALGEIGNNPQTRQ---ALKKKEVKVAPAAEVVVEKAPV 72

  Fly    82 QLEPPPPPP----------PPPPPPPTATQSIQSYPRYISQEPPTSHCQRLDERLTTTADPPATD 136
            ..:|....|          .|..|.|..|....|          ...||...:.|....|..|.|
Zfish    73 VQQPKKDSPKVQHGVKVVSEPSSPVPMETSGCAS----------DDLCQAFSDVLLNIKDVDADD 127

  Fly   137 NVNTAIGDPTLYSD--RCLENFLKVEEKHHKIPDTYFSIQKDITPPMRKIVAEWMMEVCAEENCQ 199
            ..|     |.|.|:  :.:..:|:..|....:...|.: .|::|..||.|:.:|:::|..:....
Zfish   128 YDN-----PMLCSEYVKDIYLYLRQLETEQAVRPKYLA-GKEVTGNMRAILIDWLVQVQIKFRLL 186

  Fly   200 EEVVLLALNYMDRFLSSKSVRKTQLQILAAACLLLASKLRE---PSCRALSVDLLVVYTDNSIYK 261
            :|.:.:.:..:||||....|.|.|||::....:.:|||..|   |..    .|...| ||.:...
Zfish   187 QETMYMTVAIIDRFLQDHPVPKKQLQLVGVTAMFIASKYEEMYPPEI----ADFAFV-TDRAYTT 246

  Fly   262 DDLIKWELYVLSRLGWDLSSVTPLDFLELLMMRLPIGSKNFPDINIGKVRGH----AQAFISLAA 322
            ..:.:.|:.||..|.:......||.||..       .||      ||.|...    |:.|:.|..
Zfish   247 SQIREMEMKVLRVLNFGFGRPLPLQFLRR-------ASK------IGDVTAEHHTLAKYFLELTM 298

  Fly   323 KEHKFAKFSASTIAASSIAASM 344
            .::....:..|.:|:::.|.::
Zfish   299 VDYDMVHYPPSQMASAAYALTL 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycDNP_523355.2 Cyclin_N 155..280 CDD:278560 33/127 (26%)
Cyclin_C 282..>392 CDD:281044 15/67 (22%)
ccnb1NP_571588.1 Cyclin_N 140..262 CDD:278560 33/127 (26%)
Cyclin_C 267..385 CDD:281044 15/67 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170579812
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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