DRSC/TRiP Functional Genomics Resources

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Protein Alignment CycD and cyd-1

DIOPT Version :9

Sequence 1:NP_523355.2 Gene:CycD / 32551 FlyBaseID:FBgn0010315 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_001369816.1 Gene:cyd-1 / 174941 WormBaseID:WBGene00000870 Length:405 Species:Caenorhabditis elegans


Alignment Length:326 Identity:90/326 - (27%)
Similarity:141/326 - (43%) Gaps:59/326 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 DNVNTAI---GDPTLYSD-RCLENFLKVEE----KHHKIPDTYFS-IQKDITPPMRKIVAEWMME 191
            |||.|.|   .||.:..| |...|.::.||    .:|     ||: :|::|||..|:...:|:.:
 Worm    55 DNVRTLIYNRTDPHIQLDMRAFYNCMEYEEALQPNYH-----YFTGVQENITPFHREQAIDWIYD 114

  Fly   192 VCAEENCQEEVVLLALNYMDRFLSSKSVRKTQLQILAAACLLLASKLREPSCRALSVDLLVVYTD 256
            |..||||..:|.|||::.:|||:|.:::.|..:|::|...|.:||||:.|  ..::...:..|:|
 Worm   115 VAKEENCDGDVFLLAVSLIDRFMSVQNILKHDIQMIAGVALFIASKLKAP--HPMTASKIAYYSD 177

  Fly   257 NSIYKDDLIKWELYVLSRLGWDLSSVTPLDFLELLMMRLPIGSKNFPDINIGKVRGHAQAFISLA 321
            ||...|.:::|||.:::.|.|:..|.|...|.:.|..|:|         .|..:||..|..:...
 Worm   178 NSCPIDMILQWELLIVTTLQWETESPTAFSFFDFLASRIP---------QIHNMRGDFQTVVQKC 233

  Fly   322 AKEHKFAKFSASTIAA-------------SSIAASMNGLKWHLRSGHNLHFLLSLMTDLTSVEQA 373
            .|.||.|....|...|             ..:|..:..|         |..:..|..:|......
 Worm   234 QKMHKLATLFPSMQCAIGLYYVSNLPTQNKELAVKIKDL---------LANMFQLEVNLLDSYIP 289

  Fly   374 QVRDCMLHMEDIFKEHSRNLEPFLVNIDPKEMSTLYYKRRFQIHQSQHLSQISIRPLPL--PKAP 436
            .|:.||........|.:...||     .|...::......|     |.|.::...|||.  |:.|
 Worm   290 MVQRCMSTTPIYTSEDAEKTEP-----TPSAPASTQEPEAF-----QELKELKEEPLPTPPPEEP 344

  Fly   437 A 437
            |
 Worm   345 A 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CycDNP_523355.2 Cyclin_N 155..280 CDD:278560 44/129 (34%)
Cyclin_C 282..>392 CDD:281044 24/122 (20%)
cyd-1NP_001369816.1 CYCLIN_CCND_rpt1 41..199 CDD:410219 52/150 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167231
Domainoid 1 1.000 85 1.000 Domainoid score I5239
eggNOG 1 0.900 - - E1_KOG0656
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 108 1.000 Inparanoid score I3487
Isobase 1 0.950 - 0 Normalized mean entropy S3498
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001275
OrthoInspector 1 1.000 - - oto19547
orthoMCL 1 0.900 - - OOG6_105230
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4378
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.670

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