DRSC/TRiP Functional Genomics Resources

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Protein Alignment MSBP and pgrmc1

DIOPT Version :10

Sequence 1:NP_573087.1 Gene:MSBP / 32548 FlyBaseID:FBgn0030703 Length:248 Species:Drosophila melanogaster
Sequence 2:NP_001007393.1 Gene:pgrmc1 / 492520 ZFINID:ZDB-GENE-041114-91 Length:179 Species:Danio rerio


Alignment Length:174 Identity:88/174 - (50%)
Similarity:128/174 - (73%) Gaps:9/174 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 IIREILYSPMNLALLAIICFLVYKIVRDRTEVPS-VGVAKPSEPELPKI-RRDFTVKELRQYDGT 94
            |::||..||:|::||.:..||:|||:|.  :.|: .|   |.|..|||: :||||:.:|::|||.
Zfish    12 ILQEIFTSPLNISLLCLCLFLLYKIIRG--DKPADYG---PVEEPLPKLKKRDFTLADLQEYDGL 71

  Fly    95 QPDGRVLVAVNGSVYDVSKGRRFYGPGGPYATFAGRDASRNLATFSV-VSIDKDEYDDLSDLSAV 158
            : :.|:|:||||.|:||::|::||||.|||..|||:||||.||||.: ....||.:||||||:|:
Zfish    72 K-NPRILMAVNGKVFDVTRGKKFYGPEGPYGVFAGKDASRGLATFCLEKEALKDTHDDLSDLNAM 135

  Fly   159 EMDSVREWEMQFKEKYELVGKLLRKGEEPTNYDDDEDEENVNND 202
            :.:|:.|||.||.:||:.:||||:.|||||.|.|||:.::...|
Zfish   136 QQESLSEWETQFTQKYDYIGKLLKPGEEPTEYTDDEEVKDKKKD 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MSBPNP_573087.1 Cyt-b5 84..152 CDD:459698 36/68 (53%)
pgrmc1NP_001007393.1 Cyt-b5 61..123 CDD:459698 33/62 (53%)

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