DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gapdh2 and gapA

DIOPT Version :10

Sequence 1:NP_542445.1 Gene:Gapdh2 / 32545 FlyBaseID:FBgn0001092 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_416293.1 Gene:gapA / 947679 ECOCYCID:EG10367 Length:331 Species:Escherichia coli


Alignment Length:328 Identity:219/328 - (66%)
Similarity:264/328 - (80%) Gaps:4/328 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KIGINGFGRIGRLVLRAAIDKG-ANVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTVAAEGGFLVV 66
            |:||||||||||:|.|||..:. ..:||:|| .:|.:||.|:.|:|||||||.|||..:.|.|:|
E. coli     4 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIV 67

  Fly    67 NGQKITVFSERDPANINWASAGAEYIVESTGVFTTIDKASTHLKGGAKKVIISAPSAD-APMFVC 130
            ||:||.|.:||||||:.|...|.:.:.|:||:|.|.:.|..|:..|||||:::.||.| .||||.
E. coli    68 NGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSKDNTPMFVK 132

  Fly   131 GVNLDAYKPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRD 195
            |.|.|.| ....:||||||||||||||||||||||.|:|||||||||||||||||||||.|.||.
E. coli   133 GANFDKY-AGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRG 196

  Fly   196 GRGAAQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQ 260
            ||||:|||||:|||||||||||:|.||||||||||||||||||||||||||.|.|:|::|||.|:
E. coli   197 GRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVK 261

  Fly   261 EAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLI 325
            .||.|.:||:||||:::||||||..:..:|||||||||:|||.||||:||||||.||||:|:|||
E. coli   262 AAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLI 326

  Fly   326 KYM 328
            .::
E. coli   327 AHI 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gapdh2NP_542445.1 PLN02272 <2..328 CDD:177912 219/326 (67%)
gapANP_416293.1 gapA 1..331 CDD:185323 219/328 (67%)

Return to query results.
Submit another query.