DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gapdh2 and GAPC2

DIOPT Version :9

Sequence 1:NP_001259584.1 Gene:Gapdh2 / 32545 FlyBaseID:FBgn0001092 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_172801.1 Gene:GAPC2 / 837904 AraportID:AT1G13440 Length:338 Species:Arabidopsis thaliana


Alignment Length:329 Identity:222/329 - (67%)
Similarity:269/329 - (81%) Gaps:3/329 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KIGINGFGRIGRLVLRAAIDK-GANVVAVNDPFIDVNYMVYLFKFDSTHGRFK-GTVAAEGGFLV 65
            :|||||||||||||.|..:.: ...:||||||||...||.|:||:||.||::| ..:..:....:
plant     7 RIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTL 71

  Fly    66 VNGQK-ITVFSERDPANINWASAGAEYIVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFV 129
            :.|:| :|||..|:|.:|.|..|||:::||||||||..|||:.|||||||||:|||||.||||||
plant    72 LFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFV 136

  Fly   130 CGVNLDAYKPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWR 194
            .|||...||.|:.:||||||||||||||||||||.|.||||||||||:.|||||||||||.|.||
plant   137 VGVNEHEYKSDLDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWR 201

  Fly   195 DGRGAAQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKV 259
            .||.|:.||||:|||||||||||:|:||||||||:|||||.:||||||||||.|.|:|||||..:
plant   202 GGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRLEKAATYDEIKKAI 266

  Fly   260 QEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324
            :|.:.|.:|||||||:::||||||:.|..||:|||||||:|:||||||:||||||:|||:||:||
plant   267 KEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDL 331

  Fly   325 IKYM 328
            |.:|
plant   332 IVHM 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gapdh2NP_001259584.1 PLN02272 <2..328 CDD:177912 221/327 (68%)
GAPC2NP_172801.1 PLN02358 1..338 CDD:165999 222/329 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 246 1.000 Domainoid score I544
eggNOG 1 0.900 - - E1_COG0057
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53863
OrthoDB 1 1.010 - - D945145at2759
OrthoFinder 1 1.000 - - FOG0000254
OrthoInspector 1 1.000 - - mtm1061
orthoMCL 1 0.900 - - OOG6_100218
Panther 1 1.100 - - O PTHR10836
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X175
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.790

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