DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gapdh2 and GAPA-2

DIOPT Version :9

Sequence 1:NP_001259584.1 Gene:Gapdh2 / 32545 FlyBaseID:FBgn0001092 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_001321059.1 Gene:GAPA-2 / 837848 AraportID:AT1G12900 Length:441 Species:Arabidopsis thaliana


Alignment Length:327 Identity:157/327 - (48%)
Similarity:204/327 - (62%) Gaps:7/327 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KIGINGFGRIGRLVLR---AAIDKGANVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTVAAEG-GF 63
            |:.|||||||||..||   ...|...:||.:||.. .|....:|.|:|||.|.|...|...| ..
plant   108 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSTLGIFDADVKPSGDSA 171

  Fly    64 LVVNGQKITVFSERDPANINWASAGAEYIVESTGVFTTIDKASTHLKGGAKKVIISAP-SADAPM 127
            |.|:|:.|.:.|:|:|:|:.|...|.:.::|.||||...|.|..||:.|||||:|:|| ..|.|.
plant   172 LSVDGKIIKIVSDRNPSNLPWGELGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPT 236

  Fly   128 FVCGVNLDAYKPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKL 192
            :|.|||.:.|..:..::||||||||||||..||::..|.|::|.|||.|:.|..|:.:|.....|
plant   237 YVVGVNAELYSHEDTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDL 301

  Fly   193 WRDGRGAAQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKA 257
             |..|.||.||:|.||||||||..|:|.|.|||.|:|.||||||||||||.|::.|....:|:.|
plant   302 -RRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNA 365

  Fly   258 KVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVI 322
            ..::||...|||||...||.:||.||.....||..|:...:.:.|..||:|:|||||:|||.||:
plant   366 AFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVV 430

  Fly   323 DL 324
            ||
plant   431 DL 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gapdh2NP_001259584.1 PLN02272 <2..328 CDD:177912 157/327 (48%)
GAPA-2NP_001321059.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0057
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53863
OrthoDB 1 1.010 - - D945145at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100218
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
76.690

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