DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gapdh2 and Gapdhs

DIOPT Version :9

Sequence 1:NP_001259584.1 Gene:Gapdh2 / 32545 FlyBaseID:FBgn0001092 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_076454.1 Gene:Gapdhs / 66020 RGDID:620150 Length:432 Species:Rattus norvegicus


Alignment Length:330 Identity:229/330 - (69%)
Similarity:271/330 - (82%) Gaps:1/330 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 IGINGFGRIGRLVLRAAIDKGANVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTVAAEGGFLVVNG 68
            :||||||||||||||..::||..||||||||||..||||:||:||||||:||||..:.|.|||:.
  Rat   102 VGINGFGRIGRLVLRVCMEKGVRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGTVEHKNGRLVVDN 166

  Fly    69 QKITVFSERDPANINWASAGAEYIVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCGVN 133
            .:|.||..::|..|.|:|.|..|:||:|||:.:|:.||.|:..||::||::|||.||||.|.|||
  Rat   167 LEINVFQCKEPKEIPWSSVGNPYVVEATGVYLSIEAASGHISSGARRVIVTAPSPDAPMLVMGVN 231

  Fly   134 LDAYKP-DMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGR 197
            ...|.| .|.|||||||||||||||||||::.|.|||||||||||.|||||||||||.|.||.||
  Rat   232 EKDYNPGSMTVVSNASCTTNCLAPLAKVIHERFGIVEGLMTTVHAYTATQKTVDGPSKKDWRGGR 296

  Fly   198 GAAQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEA 262
            ||.|||||:|||||||||||||.|||||||||||||||||||||||.||.:.|||..||..|:.|
  Rat   297 GAHQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLAQPASYTAIKEAVKAA 361

  Fly   263 ANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKY 327
            |.||:.|||.||:::||||||..|:|||:|||||||:|||.||||:||||||:|||:||:||::|
  Rat   362 AKGPMAGILAYTEDQVVSTDFNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYSHRVVDLLRY 426

  Fly   328 MQSKD 332
            |.|::
  Rat   427 MFSRE 431

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Gapdh2NP_001259584.1 PLN02272 <2..328 CDD:177912 226/324 (70%)
GapdhsNP_076454.1 Testis-specific N-terminal extension. /evidence=ECO:0000250 1..97
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 40..101
GapA 102..432 CDD:223135 229/330 (69%)
Gp_dh_N 102..248 CDD:278473 87/145 (60%)
Glyceraldehyde 3-phosphate binding. /evidence=ECO:0000250 247..249 1/1 (100%)
Gp_dh_C 253..410 CDD:280894 121/156 (78%)