DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gapdh2 and LOC303448

DIOPT Version :9

Sequence 1:NP_001259584.1 Gene:Gapdh2 / 32545 FlyBaseID:FBgn0001092 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_001380989.1 Gene:LOC303448 / 303448 RGDID:1566089 Length:335 Species:Rattus norvegicus


Alignment Length:335 Identity:234/335 - (69%)
Similarity:271/335 - (80%) Gaps:3/335 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSKIGINGFGRIGRLVLRAAIDKGA---NVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTVAAEGG 62
            |.|:.:||||||||||:|||....:   ..||:||||||:|||||:|::|||||:|.|||.||.|
  Rat     1 MVKVSVNGFGRIGRLVIRAAFSSASGKVETVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENG 65

  Fly    63 FLVVNGQKITVFSERDPANINWASAGAEYIVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPM 127
            .||.||:.||.|.|:|||||.|..|||||:|||||:|||::||..||||.||.||||||||||||
  Rat    66 KLVNNGKPITTFQEQDPANIKWGDAGAEYVVESTGIFTTMEKAGAHLKGRAKGVIISAPSADAPM 130

  Fly   128 FVCGVNLDAYKPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKL 192
            ||.|||...|...:|:||||.|||||||||.:||:|||:|.|||||||||.||||||||.|||||
  Rat   131 FVMGVNHKKYDNSLKIVSNAFCTTNCLAPLTEVIHDNFDIEEGLMTTVHAITATQKTVDSPSGKL 195

  Fly   193 WRDGRGAAQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKA 257
            |.:|.||.||||||||||||||.||||.||||.|||||||||||||||.||..|.|.|.||:||.
  Rat   196 WCEGHGAGQNIIPASTGAAKAVDKVIPELNGKFTGMAFRVPTPNVSVVALTCCLEKPAKYDDIKK 260

  Fly   258 KVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVI 322
            .|::|:.||||||||||:::|||.:|.|:..||.||..|||:|:|.|||||||||||:||||||:
  Rat   261 VVKQASEGPLKGILGYTEDQVVSCNFNSNFQSSTFDVGAGIALSDNFVKLISWYDNEYGYSNRVV 325

  Fly   323 DLIKYMQSKD 332
            ||:.||..|:
  Rat   326 DLMAYMALKE 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gapdh2NP_001259584.1 PLN02272 <2..328 CDD:177912 230/328 (70%)
LOC303448NP_001380989.1 PLN02272 <2..333 CDD:177912 232/330 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 264 1.000 Domainoid score I1842
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 524 1.000 Inparanoid score I1202
OMA 1 1.010 - - QHG53863
OrthoDB 1 1.010 - - D394372at33208
OrthoFinder 1 1.000 - - FOG0000254
OrthoInspector 1 1.000 - - mtm9070
orthoMCL 1 0.900 - - OOG6_100218
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X175
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.880

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