DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gapdh2 and tdh1

DIOPT Version :9

Sequence 1:NP_001259584.1 Gene:Gapdh2 / 32545 FlyBaseID:FBgn0001092 Length:332 Species:Drosophila melanogaster
Sequence 2:NP_596154.1 Gene:tdh1 / 2540547 PomBaseID:SPBC32F12.11 Length:336 Species:Schizosaccharomyces pombe


Alignment Length:331 Identity:232/331 - (70%)
Similarity:279/331 - (84%) Gaps:1/331 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KIGINGFGRIGRLVLR-AAIDKGANVVAVNDPFIDVNYMVYLFKFDSTHGRFKGTVAAEGGFLVV 66
            |:||||||||||:||| |.:.|...|||:||||||:.||.|:||:|||||||.|:|..:.|.||:
pombe     5 KVGINGFGRIGRIVLRNALVAKTIQVVAINDPFIDLEYMAYMFKYDSTHGRFDGSVEIKDGKLVI 69

  Fly    67 NGQKITVFSERDPANINWASAGAEYIVESTGVFTTIDKASTHLKGGAKKVIISAPSADAPMFVCG 131
            :|..|.|.:|||||:|.|:::||:|::||||||||.:.||.|||||||:|||||||.||||:|.|
pombe    70 DGNAIDVHNERDPADIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRVIISAPSKDAPMYVVG 134

  Fly   132 VNLDAYKPDMKVVSNASCTTNCLAPLAKVINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDG 196
            ||.:.:.|..||:|||||||||||||||||||.|.|.|||||||||||||||||||||.|.||.|
pombe   135 VNEEKFNPSEKVISNASCTTNCLAPLAKVINDTFGIEEGLMTTVHATTATQKTVDGPSKKDWRGG 199

  Fly   197 RGAAQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQE 261
            |||:.||||:|||||||||||||||||||||||||||||:||||||||:|.|..:|::|||.::.
pombe   200 RGASANIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTPDVSVVDLTVKLAKPTNYEDIKAAIKA 264

  Fly   262 AANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIK 326
            |:.||:||:||||::.||||||..|.|||:|||.|||.|:.:||||:||||||:|||.||:||:.
pombe   265 ASEGPMKGVLGYTEDAVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSRRVVDLVA 329

  Fly   327 YMQSKD 332
            |..:||
pombe   330 YTAAKD 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gapdh2NP_001259584.1 PLN02272 <2..328 CDD:177912 229/325 (70%)
tdh1NP_596154.1 GapA 5..335 CDD:223135 230/329 (70%)
Gp_dh_N 5..152 CDD:278473 93/146 (64%)
Gp_dh_C 157..314 CDD:280894 118/156 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 246 1.000 Domainoid score I420
eggNOG 1 0.900 - - E1_COG0057
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H107053
Inparanoid 1 1.050 495 1.000 Inparanoid score I248
OMA 1 1.010 - - QHG53863
OrthoFinder 1 1.000 - - FOG0000254
OrthoInspector 1 1.000 - - mtm9298
orthoMCL 1 0.900 - - OOG6_100218
Panther 1 1.100 - - O PTHR10836
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R464
SonicParanoid 1 1.000 - - X175
TreeFam 1 0.960 - -
1413.860

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