DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gbeta13F and AGB1

DIOPT Version :9

Sequence 1:NP_001303567.1 Gene:Gbeta13F / 32544 FlyBaseID:FBgn0001105 Length:340 Species:Drosophila melanogaster
Sequence 2:NP_195172.1 Gene:AGB1 / 829597 AraportID:AT4G34460 Length:377 Species:Arabidopsis thaliana


Alignment Length:361 Identity:163/361 - (45%)
Similarity:231/361 - (63%) Gaps:37/361 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 QEAESLKNAIRDARKAACDTSLLQAATSLEPIGRIQMRTR-----------RTLRGHLAKIYAMH 62
            :...:|::.:|..|....||.:.:.:.:       |.|||           |||:||..|:|::.
plant    15 ETVNNLRDQLRQRRLQLLDTDVARYSAA-------QGRTRVSFGATDLVCCRTLQGHTGKVYSLD 72

  Fly    63 WGNDSRNLVSASQDGKLIVWDSHTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNMCSIYNLK 127
            |..:...:|||||||:||||::.|:.|.|||.|..:||||||::|:|..|||||||::|||::|.
plant    73 WTPERNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQSVACGGLDSVCSIFSLS 137

  Fly   128 T---REGNVRVSRELPGHGGYLSCCRFL--DDNQIVTSSGDMSCGLWDIETGLQVTSF-----LG 182
            :   ::|.|.|||.|.||.||:|||:::  :|..::|||||.:|.|||:.|||:.:.|     .|
plant   138 STADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTCILWDVTTGLKTSVFGGEFQSG 202

  Fly   183 HTGDVMALSLA-PQCKTFVSGACDASAKLWDIREGV-CKQTFPGHESDINAVTFFPNGQAFATGS 245
            ||.||:::|:: .....|:||:||::|:|||.|... ..:||.|||.|:|.|.|||:|..|.|||
plant   203 HTADVLSVSISGSNPNWFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGS 267

  Fly   246 DDATCRLFDIRADQELAMYS-HDNIICG-ITSVAFSKSGRLLLAGYDDFN-CNVWDTMKAERSGI 307
            ||.||||:|||...:|.:|. |.:...| :||:|||.|||||.|||...| |.||||:..|....
plant   268 DDGTCRLYDIRTGHQLQVYQPHGDGENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTLLGEVVLD 332

  Fly   308 LA----GHDNRVSCLGVTENGMAVATGSWDSFLRVW 339
            |.    .|.||:||||::.:|.|:.||||||.|::|
plant   333 LGLQQDSHRNRISCLGLSADGSALCTGSWDSNLKIW 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gbeta13FNP_001303567.1 WD40 48..340 CDD:238121 155/322 (48%)
WD40 repeat 58..95 CDD:293791 18/36 (50%)
WD40 repeat 101..141 CDD:293791 23/42 (55%)
WD40 repeat 146..181 CDD:293791 17/41 (41%)
WD40 repeat 188..223 CDD:293791 12/36 (33%)
WD40 repeat 229..265 CDD:293791 20/35 (57%)
WD40 repeat 273..309 CDD:293791 20/36 (56%)
WD40 repeat 315..339 CDD:293791 13/23 (57%)
AGB1NP_195172.1 WD40 57..369 CDD:238121 154/312 (49%)
WD40 repeat 68..105 CDD:293791 18/36 (50%)
WD40 repeat 111..154 CDD:293791 23/42 (55%)
WD40 repeat 159..196 CDD:293791 16/36 (44%)
WD40 repeat 208..245 CDD:293791 12/36 (33%)
WD40 repeat 251..289 CDD:293791 21/37 (57%)
WD40 repeat 297..338 CDD:293791 21/40 (53%)
WD40 repeat 344..368 CDD:293791 13/23 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0286
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H55532
Inparanoid 1 1.050 304 1.000 Inparanoid score I767
OMA 1 1.010 - - QHG54867
OrthoDB 1 1.010 - - D704786at2759
OrthoFinder 1 1.000 - - FOG0000271
OrthoInspector 1 1.000 - - otm3158
orthoMCL 1 0.900 - - OOG6_101247
Panther 1 1.100 - - LDO PTHR19850
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X182
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.880

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