DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Myb and MYB120

DIOPT Version :9

Sequence 1:NP_511170.1 Gene:Myb / 32543 FlyBaseID:FBgn0002914 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_568819.1 Gene:MYB120 / 835593 AraportID:AT5G55020 Length:523 Species:Arabidopsis thaliana


Alignment Length:545 Identity:127/545 - (23%)
Similarity:188/545 - (34%) Gaps:187/545 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 LIKGPWTRDEDDMVIKLVRNFGPKKWTLIARYLN-GRIGKQCRERWHNHLNPNIKKTAWTEKEDE 197
            |.|||||..||:::...||..|...|..:.:... .|.||.||.||.|||.||:||.::|..|:.
plant    26 LKKGPWTAAEDEILAAYVRENGEGNWNAVQKNTGLARCGKSCRLRWANHLRPNLKKGSFTGDEER 90

  Fly   198 IIYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRKYDVERRSVNASGSDLKSSRT------ 256
            :|.|.|.:|||:||::|.:|||||||.|||:||:.::|   :.|:.:.....|:..:..      
plant    91 LIIQLHAQLGNKWARMAAQLPGRTDNEIKNYWNTRLKR---LLRQGLPLYPPDIIPNHQLHPHPH 152

  Fly   257 HLITLIKSGGISKCMNNMQHNKESGGEAVNKSENADGASVTAVKGGDLAQESQDDHQKGSNLAHL 321
            |             ....|||....                       ..:.|..||:       
plant   153 H-------------QQQQQHNHHHH-----------------------HHQQQQQHQQ------- 174

  Fly   322 SMQHLIKLTMPRQTPIILKRTRKHIPE-THHQAGCSSSETFNQEEA-------------AGNARS 372
              .:....:..|.||     :...:|. |...|..|||.||:...|             .....|
plant   175 --MYFQPQSSQRNTP-----SSSPLPSPTPANAKSSSSFTFHTTTANLLHPLSPHTPNTPSQLSS 232

  Fly   373 RPPSSPVISPIKS-------------LPFS--------------PSHFLKSPCLTTFEDMDLRAS 410
            .||..|:.||:.|             ||.|              |...|:.|. :.|......|:
plant   233 TPPPPPLSSPLCSPRNNQYPTLPLFALPRSQINNNNNGNFTFPRPPPLLQPPS-SLFAKRYNNAN 296

  Fly   411 TPVTKVYNRVG----MEIKKEMETSSIETPHKSQLGP-----RTPTPFKKALAAIGKKRDGRRYE 466
            ||:..: |||.    ..:.::..||.:..|:.|....     .|..|:.                
plant   297 TPLNCI-NRVSTAPFSPVSRDSYTSFLTLPYPSPTAQTATYHNTNNPYS---------------- 344

  Fly   467 PSSPSSLVEDLAEIIHEEHLSNSLTANNSKMMGAADQNSTLSTEYNAQSPPHMKRARKSLLSTWS 531
             ||||.                ||..::|....:....|.|.:.|...|            :::.
plant   345 -SSPSF----------------SLNPSSSSYPTSTSSPSFLHSHYTPSS------------TSFH 380

  Fly   532 SNHPYN-------AGSAKRIQPF-------ETETPSKFLTSPGDILKDTLCSEQDLPFDE----- 577
            :|..|:       :....:|..|       :.|..:..|.|.|...:.:.||..:..|:|     
plant   381 TNPVYSMKQEQLPSNQIPQIDGFNNVNNFTDNERQNHNLNSSGAHRRSSSCSLLEDVFEEAEALA 445

  Fly   578 ----GRKENR-------PFHNRRIN 591
                ||...|       |.||...|
plant   446 SGGRGRPPKRRQLTASLPNHNNNTN 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MybNP_511170.1 SANT 85..132 CDD:197842
Myb_DNA-bind_6 88..147 CDD:290632 8/12 (67%)
SANT 136..184 CDD:197842 21/48 (44%)
Myb_DNA-bind_6 139..197 CDD:290632 24/58 (41%)
SANT 188..235 CDD:197842 24/46 (52%)
Myb_DNA-binding 188..233 CDD:278669 24/44 (55%)
Cmyb_C 388..530 CDD:286408 28/164 (17%)
MYB120NP_568819.1 SANT 26..>134 CDD:333364 51/110 (46%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5147
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.770

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