DRSC/TRiP Functional Genomics Resources

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Protein Alignment Myb and RAX2

DIOPT Version :9

Sequence 1:NP_511170.1 Gene:Myb / 32543 FlyBaseID:FBgn0002914 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_001324751.1 Gene:RAX2 / 818262 AraportID:AT2G36890 Length:339 Species:Arabidopsis thaliana


Alignment Length:271 Identity:72/271 - (26%)
Similarity:106/271 - (39%) Gaps:58/271 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 KGPWTRDEDDMVIKLVRNFGP-KKWTLIARYLN-GRIGKQCRERWHNHLNPNIKKTAWTEKEDEI 198
            :|||:.:||..:...:...|. ..|..:..... .|.||.||.||.|:|.|||:...:||:||.|
plant    55 RGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLRRCGKSCRLRWLNYLRPNIRHGDFTEEEDNI 119

  Fly   199 IYQAHLELGNQWAKIAKRLPGRTDNAIKNHWNSTMRRK----------YDVERRSVNASGSDLKS 253
            ||.....:|::|:.||..|.|||||.|||:||:.:::|          :.:...:.::|.|...|
plant   120 IYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKKLIATMAPPPHHHLAIATSSSSASPSSS 184

  Fly   254 SRTHLIT------------LIKSGGISKCMNNMQHN---KESGGEAVNK--------SENADGAS 295
            |..::|.            |....||...|...|..   :|..|..||.        |...|...
plant   185 SHYNMINSLLPYNPSTNQLLTPHQGIMMTMMGQQQQLFYQEDMGNLVNSPNRNNLIMSHQEDNQE 249

  Fly   296 VTAVKGGDLAQESQDDHQKGSNLAHLSMQHLIKLTMPRQTPIILKRTRKHIPETHHQAGCSSS-- 358
            .:..||..|..:.:......|.:..:.|:|                 |.|....||......|  
plant   250 QSTNKGIMLLSDVRSGSSTTSTVTRVKMEH-----------------RDHDDHHHHHEEDERSMT 297

  Fly   359 ----ETFNQEE 365
                |.:..||
plant   298 SVVMEDYGMEE 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MybNP_511170.1 SANT 85..132 CDD:197842
Myb_DNA-bind_6 88..147 CDD:290632 5/10 (50%)
SANT 136..184 CDD:197842 16/49 (33%)
Myb_DNA-bind_6 139..197 CDD:290632 20/59 (34%)
SANT 188..235 CDD:197842 22/46 (48%)
Myb_DNA-binding 188..233 CDD:278669 22/44 (50%)
Cmyb_C 388..530 CDD:286408
RAX2NP_001324751.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5147
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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