DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Myb and snapc4

DIOPT Version :9

Sequence 1:NP_511170.1 Gene:Myb / 32543 FlyBaseID:FBgn0002914 Length:657 Species:Drosophila melanogaster
Sequence 2:XP_009300052.1 Gene:snapc4 / 561241 ZFINID:ZDB-GENE-030131-5794 Length:1598 Species:Danio rerio


Alignment Length:382 Identity:93/382 - (24%)
Similarity:158/382 - (41%) Gaps:82/382 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    88 WSKSEDVLLKQLVETHGENWEIIG--------PHFK-DRLEQQVQQRWAKVLNPELIKGPWTRDE 143
            |::.||.||::|||...     ||        .||. .|...|:..||..||:|.|.||||:::|
Zfish   413 WTEEEDDLLRELVEKMR-----IGNFIPYIQMSHFMVGRDGSQLAYRWTSVLDPSLKKGPWSKEE 472

  Fly   144 DDMVIKLVRNFGPKKWTLIARYLNGRIGKQCRERWHNHLNPNIKKTAWTEKEDEIIYQAHLELG- 207
            |.::...|..:|.::|..|...:.||....||:|:.:.|...:||..|:..|.|::.:...:.| 
Zfish   473 DQLLRNAVAKYGTREWGRIRTEVPGRTDSACRDRYLDCLRETVKKGTWSYAEMELLKEKVAKYGV 537

  Fly   208 NQWAKIAKRLPGRTDNAIKNHWNSTMRRKYDVERRSVNASGSDLKSSRTHLITLIKSGGISKCMN 272
            .:|||||..:|.|.|....:.|....|.|..::|...:.:.|..::.|..|:..:|        .
Zfish   538 GKWAKIASEIPNRVDAQCLHKWKLMTRSKKPLKRPLSSITTSYPRNKRQKLLKTVK--------E 594

  Fly   273 NMQHNKESGGEAVNKSENADGASVTAVKGGDLAQ-ESQDDHQKGSNLAHLSMQHLIKLTMPRQ-- 334
            .|..|..|..|:.....|:|       :..|||: |:.:..||.      .:|..:|..:||.  
Zfish   595 EMFFNSSSDDESQINYMNSD-------ESDDLAEDENLEIPQKE------YVQTEMKEWIPRNAM 646

  Fly   335 ----TP-------IILKRTRKHIPETHHQAGCSSSETFNQEEAAGNARSRPPSSPVISPIKSLPF 388
                ||       :.|....:.:.|:..::|..|..:.|.        :.|...|::.       
Zfish   647 VWTITPGSFRTLWVRLPTNEEELRESTKESGLGSDSSENS--------ACPNDEPIME------- 696

  Fly   389 SPSHFLKSPCLTTFEDMD----------LRASTPVTKVYNRVGM-EIKKEMETSSIE 434
                  ::..|..|.|::          |...|...|...:|.| ::|:.::..:.|
Zfish   697 ------RNTILDRFGDVERTYVGMNTVVLHRRTDDEKAMFKVCMSDVKQFIQMKATE 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MybNP_511170.1 SANT 85..132 CDD:197842 18/52 (35%)
Myb_DNA-bind_6 88..147 CDD:290632 26/67 (39%)
SANT 136..184 CDD:197842 16/47 (34%)
Myb_DNA-bind_6 139..197 CDD:290632 17/57 (30%)
SANT 188..235 CDD:197842 14/47 (30%)
Myb_DNA-binding 188..233 CDD:278669 14/45 (31%)
Cmyb_C 388..530 CDD:286408 10/58 (17%)
snapc4XP_009300052.1 SANT 353..406 CDD:304392
SANT 410..461 CDD:197842 18/52 (35%)
Myb_DNA-bind_6 413..476 CDD:290632 26/67 (39%)
Myb_DNA-binding 465..511 CDD:278669 15/45 (33%)
SANT 465..507 CDD:197842 14/41 (34%)
SANT 517..560 CDD:197842 13/42 (31%)
Myb_DNA-binding 517..559 CDD:278669 13/41 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D119160at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2047
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.950

Return to query results.
Submit another query.