DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ArgRS and Dalrd3

DIOPT Version :9

Sequence 1:NP_573081.1 Gene:ArgRS / 32539 FlyBaseID:FBgn0027093 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_001014236.1 Gene:Dalrd3 / 363146 RGDID:1359206 Length:538 Species:Rattus norvegicus


Alignment Length:619 Identity:114/619 - (18%)
Similarity:210/619 - (33%) Gaps:183/619 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 IAPVNSTSAKFGDYQ----------CNNAMGLSKKLKEKGINKAPRDIATELKGHCPASPIIEKL 159
            :||.::..|:|.|.|          |....|::..|:     .||......|:...||  :.|  
  Rat    41 LAPRSALQARFRDGQVPECVFRAVSCLQGPGVAPVLR-----CAPTPAGLSLQLQRPA--VFE-- 96

  Fly   160 EIAGAGFVNVFLSKDYASLALSNLLRNGVKP----PEVIKKRVLVDFSSPNI---AKQMHVGHLR 217
            .:.||       ...||:.|         ||    |.||       ...|.:   ...:.:..||
  Rat    97 HVLGA-------LASYATPA---------KPASPGPRVI-------LHCPALRCNPDTLRLSQLR 138

  Fly   218 STIIGESLCRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNYLNESPPISD--LQLFYKES 280
            :.::.:.|.|:|.                 ..|:.:..:           ||:.|  :..|.::.
  Rat   139 AVLVADHLVRVLR-----------------AHGVRVCTV-----------PPVRDPHMSTFLQKL 175

  Fly   281 KKRFDEDEEFKKRAYSRVVSLQKGVPNSIKAWELICNVSRKEF--QTIYERLDIS--VKERGESF 341
            :..:....:.......|...|.|            .|||::|.  ..:..||.:.  |::|..:.
  Rat   176 RVEWPSASKNTSTETLRTCVLAK------------FNVSKEETLPPGVLGRLCLKELVEQRHAAG 228

  Fly   342 YQSRMLSVVEYLRGKGLLEV-DEGREIM--WPDDTKTGIPLTIVKSDGGFTYDTSDMAAIRHRLE 403
            |..   |:...|..:.||.| .|.:|..  ||:|   |.|..:...|.|.     |...:.|   
  Rat   229 YDP---SIDHCLVTEDLLSVLSELQEAARHWPED---GHPAPVGGPDAGV-----DDCVVIH--- 279

  Fly   404 EELCDWIIYVVDSGQSTHFNTIFKAAERSAILNPLSHRVDHVQFG--VVLGEDGKKF------KT 460
                  ::...::.|....:.:::..:     :.:.||..|:..|  .|.|..|.:.      :.
  Rat   280 ------VVSCEEAFQQQKLDLLWQKVD-----DQVPHRQKHLVCGPVKVAGVPGTQMTAPEYHRL 333

  Fly   461 RSGDTVKLSDLLDEGMKRSLQQLESRGRDKVLTPQELKDAQESLAYGCIKYSD----------LC 515
            |.....|.|             .:..|.|....| ...:..:.|:...||:..          |.
  Rat   334 RHAQVCKAS-------------AQKHGGDLAQDP-AWTETFDILSVATIKFEMLSTAPQGQLLLA 384

  Fly   516 HNRISDYIFSFDKMLEDRG-NTAVYLLYTYTRICSI---ARNSGED--FTNLPEILKKTNIVLDH 574
            |:.||           .:| .:..:::|...|:.::   .::..|.  :...|.:......:|..
  Rat   385 HSTIS-----------TKGTKSGTFVMYNCARLATLFEGYKHGMEQGLYPTFPLVSSLDFSLLHD 438

  Fly   575 EKEWKLA-KTLLKLHDIL---IKCSKELFLH------FLCEFCFEVCTVFTEFYDSCYCIEKNKQ 629
            |.||.|. .::|...|:|   :..:....||      .:|:|..::...|:.:|:..:.:.:.:.
  Rat   439 EGEWLLLFNSVLPFLDLLSQTVSLASTPGLHIPVRTEMVCKFLVQLSMDFSSYYNRVHILGEPRP 503

  Fly   630 GDIIGVNHSRILLCEATAAVLRQCFYILGLKPVS 663
             .:.|...:|:.|..|...|......:|||.|:|
  Rat   504 -HLFGQMFARLQLLRAVREVFHTGLAMLGLPPLS 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArgRSNP_573081.1 Arg_tRNA_synt_N 81..171 CDD:214975 17/75 (23%)
PLN02286 83..665 CDD:215160 114/619 (18%)
ArgRS_core 197..463 CDD:185675 48/285 (17%)
DALR_1 540..665 CDD:214846 28/139 (20%)
Dalrd3NP_001014236.1 DALR_1 399..538 CDD:214846 28/139 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0018
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.