DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ArgRS and Rars1

DIOPT Version :9

Sequence 1:NP_573081.1 Gene:ArgRS / 32539 FlyBaseID:FBgn0027093 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_001099247.2 Gene:Rars1 / 287191 RGDID:1309215 Length:660 Species:Rattus norvegicus


Alignment Length:661 Identity:369/661 - (55%)
Similarity:484/661 - (73%) Gaps:16/661 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KLRELELKTQGLAARIQTAKSGEQLDV--DLVQLQIENKKLKNRLFILKKSIAEESTAAGGDVSK 72
            :|.:.|.:.:.|.|.|...|:...|:.  .|.||:.||.|||.||.||::|:..|.       .:
  Rat    11 RLLQQEKEIKSLTAEIDRLKNCSYLEASPSLEQLREENLKLKYRLNILRRSLQAER-------KR 68

  Fly    73 P-KESSSITEHLESVFRQAIASAFPEFRDTPVIIAPVNSTSAKFGDYQCNNAMGLSKKLKEKGIN 136
            | |...:|...|:.:|..||.:|:|:..:.|:::.|  |...||||||||:|||:|:.||.|...
  Rat    69 PTKNMININSRLQELFGCAIKAAYPDLENPPLVVTP--SQQPKFGDYQCNSAMGISQMLKAKEQK 131

  Fly   137 KAPRDIATELKGHCPASPIIEKLEIAGAGFVNVFLSKDYASLALSNLLRNGVKPPEV-IKKRVLV 200
            .:||:||..:..|.|.:..|:::||||.||:||.|.||:.|..|:|||.|||:.|.: ..::|:|
  Rat   132 VSPREIAENITKHLPNNEYIDRVEIAGPGFINVHLRKDFVSEQLTNLLVNGVQLPVLGENEKVIV 196

  Fly   201 DFSSPNIAKQMHVGHLRSTIIGESLCRLLEFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNYLN 265
            |||||||||:||||||||||||||:.||.||..::|:|:||:||||||||||||||:|:||:||.
  Rat   197 DFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYNVLRLNHVGDWGTQFGMLIAHLQDKFPDYLT 261

  Fly   266 ESPPISDLQLFYKESKKRFDEDEEFKKRAYSRVVSLQKGVPNSIKAWELICNVSRKEFQTIYERL 330
            .||||.|||.||||||||||.:||||||||..||.||...|:.:|||.|||:|||:||..||:.|
  Rat   262 VSPPIGDLQAFYKESKKRFDTEEEFKKRAYECVVLLQSKNPDIMKAWNLICDVSREEFNKIYDAL 326

  Fly   331 DISVKERGESFYQSRMLSVVEYLRGKGLLEVDEGREIMWPDDTKTGIPLTIVKSDGGFTYDTSDM 395
            ||::.||||||||.||..:|:....||.::||:||:|::...  ..:||||||||||:||||||:
  Rat   327 DITLIERGESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPG--CSVPLTIVKSDGGYTYDTSDL 389

  Fly   396 AAIRHRLEEELCDWIIYVVDSGQSTHFNTIFKAAERSAILNPLSHRVDHVQFGVVLGEDGKKFKT 460
            |||:.||.||..:.||||||:||:|||.|:|.||:.....:|...||.||.||||||||.|||||
  Rat   390 AAIKQRLFEEKANKIIYVVDNGQATHFQTVFAAAQMIGWYDPKVTRVAHVGFGVVLGEDKKKFKT 454

  Fly   461 RSGDTVKLSDLLDEGMKRSLQQLESRGRDKVLTPQELKDAQESLAYGCIKYSDLCHNRISDYIFS 525
            |||:||:|.|||:||::||:.:|:.:.||||||.:|||.||.|:|||||||:||.|||::||:||
  Rat   455 RSGETVRLMDLLEEGLRRSMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRLNDYVFS 519

  Fly   526 FDKMLEDRGNTAVYLLYTYTRICSIARNSGEDFTNLPEILKKTNIVLDHEKEWKLAKTLLKLHDI 590
            |||||:||||||.||||.:|||.||||.:..|...|....::|.|:|||||||||.:.:|:..:|
  Rat   520 FDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEEMLQRAARETKIILDHEKEWKLGRCILRFPEI 584

  Fly   591 LIKCSKELFLHFLCEFCFEVCTVFTEFYDSCYCIEKNKQ-GDIIGVNHSRILLCEATAAVLRQCF 654
            |.|...:||||.||::.:|:.|.||||||||||:||::| |.::.||..|:|||||.|||:.:.|
  Rat   585 LQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGKVLKVNMWRMLLCEAVAAVMAKGF 649

  Fly   655 YILGLKPVSKM 665
            .|||:|||.:|
  Rat   650 DILGIKPVQRM 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArgRSNP_573081.1 Arg_tRNA_synt_N 81..171 CDD:214975 39/89 (44%)
PLN02286 83..665 CDD:215160 344/583 (59%)
ArgRS_core 197..463 CDD:185675 173/265 (65%)
DALR_1 540..665 CDD:214846 67/125 (54%)
Rars1NP_001099247.2 Could be involved in the assembly of the multisynthetase complex. /evidence=ECO:0000250 1..72 22/67 (33%)
Arg_tRNA_synt_N 79..166 CDD:214975 39/88 (44%)
PLN02286 80..660 CDD:215160 344/583 (59%)
ArgRS_core 193..457 CDD:185675 173/265 (65%)
L-arginine binding. /evidence=ECO:0000250|UniProtKB:P54136 200..202 1/1 (100%)
'HIGH' region. /evidence=ECO:0000250 201..212 9/10 (90%)
Anticodon_Ia_like 498..660 CDD:299868 95/161 (59%)
Interaction with tRNA. /evidence=ECO:0000250|UniProtKB:Q05506 529..543 10/13 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338049
Domainoid 1 1.000 445 1.000 Domainoid score I508
eggNOG 1 0.900 - - E1_COG0018
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68281
Inparanoid 1 1.050 711 1.000 Inparanoid score I616
OMA 1 1.010 - - QHG60659
OrthoDB 1 1.010 - - D463402at2759
OrthoFinder 1 1.000 - - FOG0004174
OrthoInspector 1 1.000 - - oto96614
orthoMCL 1 0.900 - - OOG6_100350
Panther 1 1.100 - - LDO PTHR11956
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2924
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

Return to query results.
Submit another query.