DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ArgRS and rars-1

DIOPT Version :9

Sequence 1:NP_573081.1 Gene:ArgRS / 32539 FlyBaseID:FBgn0027093 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_001022551.1 Gene:rars-1 / 175659 WormBaseID:WBGene00004679 Length:713 Species:Caenorhabditis elegans


Alignment Length:699 Identity:339/699 - (48%)
Similarity:464/699 - (66%) Gaps:62/699 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 LAARIQTAKSGEQLDVDLVQLQIE-------NKKLKNRLFILKKSIAEE---------------- 62
            |..|:.||....:|..:|::...|       |.|||.|..||:|||||:                
 Worm    23 LLNRLITAMQKGELTDELLEHIPELGDAKKLNDKLKYRKSILEKSIAEQAAKNKKNGVKATSTSS 87

  Fly    63 ---STAA------------GGDVSKPKES------------SSITEHLESVFRQAIASAFPEFRD 100
               ||:|            ||  :.||::            |||...|:|:|::||..|||.. |
 Worm    88 PSSSTSAPAEKKAKKDGKTGG--APPKQAKKVDYVTVEDYGSSIFGRLQSLFKKAIEDAFPGL-D 149

  Fly   101 TPVIIAPVNSTSAKFGDYQCNNAMGLSKKLKEKGINKAPRDIATELKGHCPAS-PIIEKLEIAGA 164
            .|:::|  .:.:.:|||||||:||.::.|||...|||.|.|:|.|::...|.. ..:||:::..|
 Worm   150 VPLLLA--ETPNPQFGDYQCNSAMPIAAKLKANKINKRPGDVAKEIQAKLPTKIDFVEKIDVMPA 212

  Fly   165 GFVNVFLSKDYASLALSNLLRNGVKPPEVIKKRVLVDFSSPNIAKQMHVGHLRSTIIGESLCRLL 229
            ||:|:||:.||....:|.|...|||.|::.:||||||||||||||:||||||||||||:|:|||.
 Worm   213 GFINIFLNTDYLRRQISLLASEGVKLPKLTRKRVLVDFSSPNIAKEMHVGHLRSTIIGDSICRLF 277

  Fly   230 EFLQHDVIRINHLGDWGTQFGMLIAHLEDRFPNYLNESPPISDLQLFYKESKKRFDEDEEFKKRA 294
            |.:..||:|:||:||||||||||||||.||||::|.:.|.|||||.|||||||||||||:|||||
 Worm   278 EAVGFDVLRVNHIGDWGTQFGMLIAHLYDRFPDFLKKLPDISDLQAFYKESKKRFDEDEQFKKRA 342

  Fly   295 YSRVVSLQKGVPNSIKAWELICNVSRKEFQTIYERLDISVKERGESFYQSRMLSVVEYLRGK--G 357
            |..||.||....:.:|||..||:||:|..|.:|..|||.:|:.||||||.:|:.:|::::..  .
 Worm   343 YEYVVKLQSHDGDIVKAWNTICDVSKKYNQIVYNYLDIKIKDVGESFYQDKMIELVKWVKTNKPD 407

  Fly   358 LLEVDEGREIMWPDDTKTGIPLTIVKSDGGFTYDTSDMAAIRHRLEEELCDWIIYVVDSGQSTHF 422
            :|..::||:||:|  |...||||:|||||||||||||:||:::|:.||.|||.|||||||||.|.
 Worm   408 MLREEDGRQIMFP--TGCDIPLTVVKSDGGFTYDTSDLAALKYRMLEEKCDWNIYVVDSGQSLHL 470

  Fly   423 NTIFKAAERSAILNPLSHRVDHVQFGVVLGEDGKKFKTRSGDTVKLSDLLDEGMKRSLQQLESRG 487
            .|::.|.......:....||:||.||:|||:|.||||||||:||:|.|||.||:||:.::|..:|
 Worm   471 ETVYAAGRDFGWYDESIQRVEHVAFGLVLGDDKKKFKTRSGETVRLLDLLSEGVKRATEKLIEKG 535

  Fly   488 RDKVLTPQELKDAQESLAYGCIKYSDLCHNRISDYIFSFDKMLEDRGNTAVYLLYTYTRICSIAR 552
            |:..::.::|..|::::|:||:||:||.|.|..||:||||:||||||||||||||.||||.||..
 Worm   536 RETAMSEEQLVAARDAVAFGCVKYADLSHTRTQDYVFSFDRMLEDRGNTAVYLLYAYTRIQSIFE 600

  Fly   553 NSGEDFTNLPEILKKT-NIVLDHEKEWKLAKTLLKLHDILIKCSKELFLHFLCEFCFEVCTVFTE 616
            .......:|.:.:..| .:.|||..|:||||.||||.|.::.....|.||.:|::.:::.|:|.:
 Worm   601 KDEVKNVDLVKYIASTPTLPLDHPGEFKLAKQLLKLSDCVLLVLDSLMLHQMCDYVYQLATLFHD 665

  Fly   617 FYDSCYCIEKNKQGDIIGVNHSRILLCEATAAVLRQCFYILGLKPVSKM 665
            ||:.||.|| ||:|:...|:..|:.||:.|..|:..||.||||:.|:||
 Worm   666 FYNECYVIE-NKEGEKPFVHMHRLALCDVTRKVMSTCFKILGLREVNKM 713

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ArgRSNP_573081.1 Arg_tRNA_synt_N 81..171 CDD:214975 37/90 (41%)
PLN02286 83..665 CDD:215160 308/585 (53%)
ArgRS_core 197..463 CDD:185675 165/267 (62%)
DALR_1 540..665 CDD:214846 52/125 (42%)
rars-1NP_001022551.1 Arg_tRNA_synt_N 132..219 CDD:214975 37/89 (42%)
PLN02286 133..713 CDD:215160 308/585 (53%)
ArgRS_core 245..511 CDD:185675 165/267 (62%)
Anticodon_Ia_like 550..713 CDD:299868 78/163 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158196
Domainoid 1 1.000 415 1.000 Domainoid score I333
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H68281
Inparanoid 1 1.050 622 1.000 Inparanoid score I479
Isobase 1 0.950 - 0 Normalized mean entropy S1498
OMA 1 1.010 - - QHG60659
OrthoDB 1 1.010 - - D463402at2759
OrthoFinder 1 1.000 - - FOG0004174
OrthoInspector 1 1.000 - - oto17260
orthoMCL 1 0.900 - - OOG6_100350
Panther 1 1.100 - - LDO PTHR11956
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1455
SonicParanoid 1 1.000 - - X2924
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.890

Return to query results.
Submit another query.