DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Chc and Cltc

DIOPT Version :9

Sequence 1:NP_001096993.1 Gene:Chc / 32537 FlyBaseID:FBgn0000319 Length:1678 Species:Drosophila melanogaster
Sequence 2:XP_006534046.1 Gene:Cltc / 67300 MGIID:2388633 Length:1683 Species:Mus musculus


Alignment Length:1672 Identity:1335/1672 - (79%)
Similarity:1506/1672 - (90%) Gaps:13/1672 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTQPLPIRFQEHLQLTNVGINANSFSFSTLTMESDKFICVREKVNDTAQVVIIDMNDATNPTRRP 65
            |.|.|||||||||||.|:|||..:..|||||||||||||:||||.:.||||||||||.:||.|||
Mouse     1 MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRP 65

  Fly    66 ISADSAIMNPASKVIALK-AQKTLQIFNIEMKSKMKAHTMNEDVVFWKWISLNTLALVTETSVFH 129
            |||||||||||||||||| |.|||||||||||||||||||.:||.|||||||||:||||:.:|:|
Mouse    66 ISADSAIMNPASKVIALKDAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTDNAVYH 130

  Fly   130 WSMEGDSMPQKMFDRHSSLNGCQIINYRCNASQQWLLLVGISALPSRVAGAMQLYSVERKVSQAI 194
            |||||:|.|.|||||||||.||||||||.:|.|:||||.||||..:||.||||||||:|||||.|
Mouse   131 WSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPI 195

  Fly   195 EGHAASFATFKIDANKEPTTLFCFAVRTATGGKLHIIEVGAPPNGNQPFAKKAVDVFFPPEAQND 259
            ||||||||.||::.|.|.:||||||||...||||||||||.||.|||||.|||||||||||||||
Mouse   196 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND 260

  Fly   260 FPVAMQVSAKYDTIYLITKYGYIHLYDMETATCIYMNRISADTIFVTAPHEASGGIIGVNRKGQV 324
            ||||||:|.|:|.::||||||||||||:||.|||||||||.:||||||||||:.|||||||||||
Mouse   261 FPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 325

  Fly   325 LSVTVDEEQIIPYINTVLQNPDLALRMAVRNNLAGAEDLFVRKFNKLFTAGQYAEAAKVAALAPK 389
            |||.|:||.|||||..|||||||||||||||||||||:||.||||.||..|.|:|||||||.|||
Mouse   326 LSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK 390

  Fly   390 AILRTPQTIQRFQQVQTPAGSTTPPLLQYFGILLDQGKLNKFESLELCRPVLLQGKKQLCEKWLK 454
            .|||||.||:|||.|....|.|: |||||||||||||:|||:||||||||||.||:|||.|||||
Mouse   391 GILRTPDTIRRFQSVPAQPGQTS-PLLQYFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLK 454

  Fly   455 EEKLECSEELGDLVKASDLTLALSIYLRANVPNKVIQCFAETGQFQKIVLYAKKVNYTPDYVFLL 519
            |:|||||||||||||:.|.|||||:|||||||||||||||||||.||||||||||.||||::|||
Mouse   455 EDKLECSEELGDLVKSVDPTLALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLL 519

  Fly   520 RSVMRSNPEQGAGFASMLVAEEEPLADINQIVDIFMEHSMVQQCTAFLLDALKHNRPAEGALQTR 584
            |:|||.:|:||..||.|||.:|||||||.||||:|||::::||||||||||||:|||:||.||||
Mouse   520 RNVMRISPDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTR 584

  Fly   585 LLEMNLMSAPQVADAILGNAMFTHYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHMLNA 649
            |||||||.|||||||||||.||||||||||||||||||||||||||:||||||||||||||:||.
Mouse   585 LLEMNLMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNP 649

  Fly   650 EWLVSFFGTLSVEDSLECLKAMLTANLRQNLQICVQIATKYHEQLTNKALIDLFEGFKSYDGLFY 714
            ||||::||:||||||||||:|||:||:|||||||||:|:||||||:.::||:|||.|||::||||
Mouse   650 EWLVNYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFY 714

  Fly   715 FLSSIVNFSQDPEVHFKYIQAACKTNQIKEVERICRESNCYNPERVKNFLKEAKLTDQLPLIIVC 779
            ||.|||||||||:||||||||||||.|||||||||||||||:|||||||||||||||||||||||
Mouse   715 FLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVC 779

  Fly   780 DRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVVGGLLDVDCSEDIIKNLILVVKGQFSTD 844
            |||||||||||||||||||||||||||||||||||||:|||||||||||:||||||||:||||||
Mouse   780 DRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTD 844

  Fly   845 ELVEEVEKRNRLKLLLPWLESRVHEGCVEPATHNALAKIYIDSNNNPERYLKENQYYDSRVVGRY 909
            |||.||||||||||||||||:|:||||.|||||||||||||||||||||:|:||.||||||||:|
Mouse   845 ELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKY 909

  Fly   910 CEKRDPHLACVAYERGLCDRELIAVCNENSLFKSEARYLVGRRDAELWAEVLSESNPYKRQLIDQ 974
            ||||||||||||||||.||.|||.||||||||||.:||||.|:|.|||..||.|||||:|.||||
Mouse   910 CEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQ 974

  Fly   975 VVQTALSETQDPDDISVTVKAFMTADLPNELIELLEKIILDSSVFSDHRNLQNLLILTAIKADRT 1039
            ||||||||||||:::|||||||||||||||||||||||:||:||||:||||||||||||||||||
Mouse   975 VVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRT 1039

  Fly  1040 RVMDYINRLENYDAPDIANIAISNQLYEEAFAIFKKFDVNTSAIQVLIDQVNNLERANEFAERCN 1104
            |||:|||||:||||||||||||||:|:|||||||:||||||||:||||:.:.||:||.|||||||
Mouse  1040 RVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCN 1104

  Fly  1105 EPAVWSQLAKAQLQQGLVKEAIDSYIKADDPSAYVDVVDVASKVESWDDLVRYLQMARKKARESY 1169
            ||||||||||||||:|:|||||||||||||||:|::||..|:...:|::||:|||||||||||||
Mouse  1105 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANASGNWEELVKYLQMARKKARESY 1169

  Fly  1170 IESELIYAYARTGRLADLEEFISGPNHADIQKIGNRCFSDGMYDAAKLLYNNVSNFARLAITLVY 1234
            :|:|||:|.|:|.|||:|||||:|||:|.||::|:||:.:.|||||||||||||||.|||.|||:
Mouse  1170 VETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVH 1234

  Fly  1235 LKEFQGAVDSARKANSTRTWKEVCFACVDAEEFRLAQMCGLHIVVHADELEDLINYYQNRGYFDE 1299
            |.|:|.|||.|||||||||||||||||||.:||||||||||||||||||||:||||||:||||:|
Mouse  1235 LGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEE 1299

  Fly  1300 LIALLESALGLERAHMGMFTELAILYSKFKPSKMREHLELFWSRVNIPKVLRAAESAHLWSELVF 1364
            ||.:||:||||||||||||||||||||||||.|||||||||||||||||||||||.||||:||||
Mouse  1300 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 1364

  Fly  1365 LYDKYEEYDNAVLAMMAHPTEAWREGHFKDIITKVANIELYYKAIEFYLDFKPLLLNDMLLVLAP 1429
            |||||||||||::.||.|||:||:||.||||||||||:|||||||:|||:||||||||:|:||:|
Mouse  1365 LYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYKAIQFYLEFKPLLLNDLLMVLSP 1429

  Fly  1430 RMDHTRAVSYFSKTGYLPLVKPYLRSVQSLNNKAINEALNGLLIDEEDYQGLRNSIDGFDNFDNI 1494
            |:||||||:||||...||||||||||||:.|||::||:||.|.|.|||||.||.|||.:||||||
Mouse  1430 RLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNI 1494

  Fly  1495 ALAQKLEKHELTEFRRIAAYLYKGNNRWKQSVELCKKDKLYKDAMEYAAESCKQDIAEELLGWFL 1559
            :|||:||||||.|||||||||:||||||||||||||||.||||||:||:||...::|||||.|||
Mouse  1495 SLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFL 1559

  Fly  1560 ERDAYDCFAACLYQCYDLLRPDVILELAWKHKIVDFAMPYLIQVLREYTT-------KVDKLELN 1617
            :.:..:||.|||:.|||||||||:||.||:|.|:||||||.|||::||.|       |||||:.:
Mouse  1560 QEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDAIKEKVDKLDAS 1624

  Fly  1618 EAQREKEDDSTEHKNIIQMEPQLMITAGPAMGIPPQ----YAQNYPP 1660
            |:.|::|:.:||.:.|:..:||||:||||::.:|||    |....||
Mouse  1625 ESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPP 1671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ChcNP_001096993.1 Clathrin_propel 19..56 CDD:279702 27/36 (75%)
Clathrin_propel 148..187 CDD:279702 28/38 (74%)
Clathrin_propel 198..234 CDD:279702 25/35 (71%)
Clathrin_propel 256..288 CDD:279702 25/31 (81%)
Clathrin_propel 296..330 CDD:279702 28/33 (85%)
Clathrin-link 331..353 CDD:286367 18/21 (86%)
Clathrin_H_link 364..422 CDD:290550 39/57 (68%)
CLH 542..672 CDD:128594 111/129 (86%)
Clathrin 546..679 CDD:279031 112/132 (85%)
CLH 687..825 CDD:128594 123/137 (90%)
Clathrin 697..827 CDD:279031 118/129 (91%)
CLH 834..969 CDD:128594 114/134 (85%)
Clathrin 844..971 CDD:279031 106/126 (84%)
CLH 980..1118 CDD:128594 119/137 (87%)
Clathrin 984..1120 CDD:279031 117/135 (87%)
CLH 1129..1266 CDD:128594 98/136 (72%)
Clathrin 1134..1268 CDD:279031 94/133 (71%)
CLH 1275..1417 CDD:128594 122/141 (87%)
Clathrin 1279..1417 CDD:279031 118/137 (86%)
CLH 1428..1579 CDD:128594 110/150 (73%)
Clathrin 1429..1562 CDD:279031 101/132 (77%)
CltcXP_006534046.1 Clathrin_propel 19..56 CDD:279702 27/36 (75%)
Clathrin_propel 149..188 CDD:279702 28/38 (74%)
Clathrin_propel 199..235 CDD:279702 25/35 (71%)
Clathrin_propel 257..289 CDD:279702 25/31 (81%)
Clathrin_propel 297..331 CDD:279702 28/33 (85%)
Clathrin-link 332..355 CDD:370397 19/22 (86%)
Clathrin_H_link 357..422 CDD:372748 46/65 (71%)
CLH 542..675 CDD:128594 113/132 (86%)
CLH 687..825 CDD:128594 123/137 (90%)
CLH 834..969 CDD:128594 114/134 (85%)
CLH 980..1119 CDD:128594 120/138 (87%)
TPR repeat 1106..1132 CDD:276809 23/25 (92%)
CLH 1129..1266 CDD:128594 98/136 (72%)
CLH 1275..1417 CDD:128594 122/141 (87%)
Clathrin 1428..1562 CDD:366214 101/133 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849976
Domainoid 1 1.000 267 1.000 Domainoid score I1865
eggNOG 1 0.900 - - E1_KOG0985
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3572
Inparanoid 1 1.050 2701 1.000 Inparanoid score I26
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53703
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002324
OrthoInspector 1 1.000 - - oto92287
orthoMCL 1 0.900 - - OOG6_101144
Panther 1 1.100 - - LDO PTHR10292
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R209
SonicParanoid 1 1.000 - - X1532
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

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