DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8974 and Rnf20

DIOPT Version :9

Sequence 1:NP_573076.1 Gene:CG8974 / 32532 FlyBaseID:FBgn0030693 Length:277 Species:Drosophila melanogaster
Sequence 2:NP_001156735.1 Gene:Rnf20 / 109331 MGIID:1925927 Length:973 Species:Mus musculus


Alignment Length:61 Identity:21/61 - (34%)
Similarity:30/61 - (49%) Gaps:11/61 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 CNICLDTAKDAVVSMCGHLFCWPCLHQWLLTRPNRKLCPVCKAAVDKDKVIPLYGRNSTHQ 185
            |..|....||||::.|.|:||:.|:.....||  ::.||.|.||         :|.|..|:
Mouse   920 CPCCNMRKKDAVLTKCFHVFCFECVKTRYDTR--QRKCPKCNAA---------FGANDFHR 969

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8974NP_573076.1 RING 124..169 CDD:238093 17/43 (40%)
Rnf20NP_001156735.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37
Smc <41..394 CDD:224117
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 128..153
PTZ00121 <320..934 CDD:173412 6/13 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 507..620
RING-HC_RNF20_like 918..963 CDD:319618 18/53 (34%)
RING-HC finger (C3HC4-type) 920..958 CDD:319618 15/39 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R146
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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