DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Paf-AHalpha and Atrn

DIOPT Version :9

Sequence 1:NP_525089.2 Gene:Paf-AHalpha / 32529 FlyBaseID:FBgn0025809 Length:225 Species:Drosophila melanogaster
Sequence 2:NP_112641.1 Gene:Atrn / 83526 RGDID:69063 Length:1432 Species:Rattus norvegicus


Alignment Length:28 Identity:8/28 - (28%)
Similarity:14/28 - (50%) Gaps:5/28 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 LGDCIFETVQDTEAW-----NKYFAPLH 62
            |.|.::....||:.|     :::|..||
  Rat   533 LADDLYRYHVDTQMWTILKDSRFFRYLH 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Paf-AHalphaNP_525089.2 PAF_acetylesterase_like 3..212 CDD:238858 8/28 (29%)
AtrnNP_112641.1 CUB 135..250 CDD:238001
Kelch_1 343..382 CDD:279660
KELCH repeat 344..385 CDD:276965
Kelch 1. /evidence=ECO:0000255 355..405
Kelch_5 393..431 CDD:290565
KELCH repeat 395..447 CDD:276965
Kelch 2. /evidence=ECO:0000255 406..454
KELCH repeat 450..493 CDD:276965
Kelch 3. /evidence=ECO:0000255 464..511
KELCH repeat 504..553 CDD:276965 5/19 (26%)
Kelch 4. /evidence=ECO:0000255 516..567 8/28 (29%)
KELCH repeat 557..612 CDD:276965 2/4 (50%)
Kelch 5. /evidence=ECO:0000255 569..627
Kelch 6. /evidence=ECO:0000255 628..674
CLECT 791..923 CDD:295302
PSI 935..986 CDD:279745
EGF_Lam 1065..1110 CDD:238012
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1388
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.