DRSC/TRiP Functional Genomics Resources

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Protein Alignment Paf-AHalpha and atrnl1a

DIOPT Version :9

Sequence 1:NP_525089.2 Gene:Paf-AHalpha / 32529 FlyBaseID:FBgn0025809 Length:225 Species:Drosophila melanogaster
Sequence 2:XP_001331928.5 Gene:atrnl1a / 792417 ZFINID:ZDB-GENE-081028-60 Length:1400 Species:Danio rerio


Alignment Length:106 Identity:28/106 - (26%)
Similarity:46/106 - (43%) Gaps:25/106 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 KLPNA--YIVLPSLLPRGQQPNKLREK---NAKINEVVNGLTKGL--------YRVQT-----VA 169
            |:|:|  |..||::.|.||...:...|   :.|:..|:.|.|...        |.:::     |.
Zfish   263 KVPSAESYWFLPNVKPDGQSLGRASHKAVVHGKLMWVIGGFTFNYSSFQMVMNYNLESSTWDVVP 327

  Fly   170 IDKGLVQTDG-SISHHD----MFDYKNLTNAGAKKILEPLY 205
            |:.|.:|..| |::.|.    ||..|  ..||...:.:.|:
Zfish   328 INGGPLQRYGHSLALHKDVIYMFGGK--LEAGFGNVTDELW 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Paf-AHalphaNP_525089.2 PAF_acetylesterase_like 3..212 CDD:238858 28/106 (26%)
atrnl1aXP_001331928.5 CUB 73..188 CDD:238001
KELCH repeat 285..333 CDD:276965 9/47 (19%)
Kelch_1 285..327 CDD:279660 6/41 (15%)
Kelch_5 332..372 CDD:290565 10/37 (27%)
KELCH repeat 335..382 CDD:276965 9/34 (26%)
KELCH repeat 391..436 CDD:276965
KELCH repeat 501..556 CDD:276965
CLECT 768..896 CDD:295302
PSI 911..961 CDD:279745
EGF_Lam 1035..1080 CDD:238012
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1388
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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