DRSC/TRiP Functional Genomics Resources

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Protein Alignment Paf-AHalpha and Atrn

DIOPT Version :9

Sequence 1:NP_525089.2 Gene:Paf-AHalpha / 32529 FlyBaseID:FBgn0025809 Length:225 Species:Drosophila melanogaster
Sequence 2:XP_006498669.1 Gene:Atrn / 11990 MGIID:1341628 Length:1510 Species:Mus musculus


Alignment Length:28 Identity:8/28 - (28%)
Similarity:14/28 - (50%) Gaps:5/28 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 LGDCIFETVQDTEAW-----NKYFAPLH 62
            |.|.::....||:.|     :::|..||
Mouse   566 LADDLYRYDVDTQMWTILKDSRFFRYLH 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Paf-AHalphaNP_525089.2 PAF_acetylesterase_like 3..212 CDD:238858 8/28 (29%)
AtrnXP_006498669.1 CUB 168..283 CDD:238001
PHA03098 <363..527 CDD:222983
KELCH repeat 377..418 CDD:276965
KELCH repeat 428..480 CDD:276965
KELCH repeat 484..532 CDD:276965
PHA03098 <508..668 CDD:222983 8/28 (29%)
KELCH repeat 537..586 CDD:276965 5/19 (26%)
KELCH repeat 590..645 CDD:276965 2/4 (50%)
PSI 683..729 CDD:214655
CLECT 824..956 CDD:382969
PSI 968..1019 CDD:366642
EGF_Lam 1098..1143 CDD:238012
EGF_Lam 1144..1189 CDD:238012
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1388
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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